Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   GZ989_RS03630 Genome accession   NZ_CP059432
Coordinates   663980..664354 (+) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus strain CFViADRI1362     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 658980..669354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ989_RS03610 (GZ989_003610) - 660087..660899 (-) 813 WP_002849747.1 HDOD domain-containing protein -
  GZ989_RS03615 (GZ989_003615) ilvC 661046..662068 (+) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  GZ989_RS03620 (GZ989_003620) - 662147..663232 (+) 1086 WP_134864086.1 divergent polysaccharide deacetylase family protein -
  GZ989_RS03625 (GZ989_003625) dprA 663216..663983 (+) 768 WP_002849743.1 DNA-processing protein DprA Machinery gene
  GZ989_RS03630 (GZ989_003630) dprB 663980..664354 (+) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  GZ989_RS03635 (GZ989_003635) - 664362..665225 (+) 864 WP_002849738.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GZ989_RS03640 (GZ989_003640) - 665211..666455 (-) 1245 WP_011732089.1 hypothetical protein -
  GZ989_RS03645 (GZ989_003645) queA 666465..667484 (-) 1020 WP_002849734.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  GZ989_RS03650 (GZ989_003650) tatC 667481..668236 (-) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  GZ989_RS03655 (GZ989_003655) tatB 668236..668691 (-) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=469587 GZ989_RS03630 WP_002849740.1 663980..664354(+) (dprB) [Campylobacter fetus strain CFViADRI1362]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=469587 GZ989_RS03630 WP_002849740.1 663980..664354(+) (dprB) [Campylobacter fetus strain CFViADRI1362]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524