Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HZ993_RS11525 Genome accession   NZ_CP059068
Coordinates   2471444..2473054 (-) Length   536 a.a.
NCBI ID   WP_209398059.1    Uniprot ID   -
Organism   Rhodoferax sp. AJA081-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2466444..2478054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ993_RS11505 (HZ993_11505) - 2466970..2467830 (-) 861 WP_209398051.1 UPF0149 family protein -
  HZ993_RS11510 (HZ993_11510) - 2467918..2469567 (+) 1650 WP_209398053.1 FMN-binding glutamate synthase family protein -
  HZ993_RS11515 (HZ993_11515) - 2469572..2470021 (-) 450 WP_245213913.1 putative toxin-antitoxin system toxin component, PIN family -
  HZ993_RS11520 (HZ993_11520) - 2470104..2471447 (-) 1344 WP_209398057.1 class I SAM-dependent RNA methyltransferase -
  HZ993_RS11525 (HZ993_11525) rpoN/rpoN1 2471444..2473054 (-) 1611 WP_209398059.1 RNA polymerase factor sigma-54 Machinery gene
  HZ993_RS11530 (HZ993_11530) lptB 2473173..2473949 (-) 777 WP_209398061.1 LPS export ABC transporter ATP-binding protein -
  HZ993_RS11535 (HZ993_11535) lptA 2473946..2474590 (-) 645 WP_209398063.1 lipopolysaccharide transport periplasmic protein LptA -
  HZ993_RS11540 (HZ993_11540) pap 2474882..2476432 (+) 1551 WP_209398065.1 polyphosphate:AMP phosphotransferase -
  HZ993_RS11545 (HZ993_11545) - 2476577..2477854 (-) 1278 WP_209395225.1 IS256 family transposase -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 58854.25 Da        Isoelectric Point: 4.6412

>NTDB_id=466965 HZ993_RS11525 WP_209398059.1 2471444..2473054(-) (rpoN/rpoN1) [Rhodoferax sp. AJA081-3]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLELTQDEAVREDFGLAQADTPVSAGEREAEVAPA
SIADYADSTGASGTKDEETTPLGSGDDEPSWDGDGTTEMVPDDGEWGTDAKAKANNLGDGEDTDATELARTQESLQSFLH
RQALSLRLSETDASALRFLIESLNDDGYLEDPLPDLARSLAGDDEEQVEDLVHHFTVALGLLHSLEPAGVGARDLGECLR
LQLRAQLDDALNPPEPEYASLLALALRICGQPMDLLARRDVKNLVQRCGGTDAQTREAITLIARLEPKPGRRFIDVERNI
VVPDVLVVAAGKARNGINPQFRVMLNPEVMPKLRVHDIYANVLRNHRGGGKDSASYAGLQQRLQEARWFIKNIQQRFDTI
LRVSTAIVERQKGFFSHGEMAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTFELKYFFGSGLGTESGGNASSTAV
RALIKQFISAESDKKPLSDNQISEMLKEQGIECARRTVAKYREGLKIAPASLRKAL

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=466965 HZ993_RS11525 WP_209398059.1 2471444..2473054(-) (rpoN/rpoN1) [Rhodoferax sp. AJA081-3]
ATGAAGCAGGGCCTTTCTCTACGCGTTTCGCAGCACCTGGCGCTCACGCCCCAGTTGCAGCAGTCCATCCGCCTCTTGCA
ACTCTCCACGCTGGAACTCAGTCAGGAGGTGGAGCAGATGCTGGACGAGAACCCCTTCCTGGAGCTGACCCAGGACGAGG
CCGTGCGCGAGGACTTTGGCCTGGCCCAGGCCGACACACCGGTCAGCGCCGGTGAGCGCGAAGCCGAGGTTGCTCCTGCT
TCCATAGCAGACTATGCAGATTCCACGGGGGCTAGCGGCACAAAAGACGAAGAGACAACGCCGCTGGGCAGCGGTGACGA
TGAGCCCAGCTGGGACGGCGACGGCACCACCGAGATGGTGCCCGACGATGGCGAATGGGGCACGGACGCCAAAGCCAAAG
CCAACAACTTAGGCGACGGCGAAGATACCGACGCCACCGAGTTGGCCCGCACGCAGGAATCCTTGCAGTCCTTTTTGCAC
CGCCAGGCCCTGAGCCTCAGGCTGAGCGAGACCGACGCCAGCGCGTTGCGCTTTCTGATCGAGTCGCTGAACGACGACGG
CTACTTGGAAGACCCCTTGCCCGACCTGGCCCGCAGCCTGGCCGGTGACGACGAAGAACAGGTTGAAGACCTGGTGCACC
ACTTCACGGTGGCCTTGGGTCTGCTGCACAGCCTGGAGCCAGCAGGCGTGGGCGCGCGCGACCTAGGCGAATGCCTGCGC
CTGCAGCTGCGCGCCCAACTGGACGACGCGCTGAACCCGCCCGAGCCCGAATACGCCAGCCTGTTGGCACTGGCTTTGCG
CATCTGCGGCCAGCCCATGGATTTGCTGGCCCGCCGCGATGTCAAAAATCTGGTCCAACGCTGTGGTGGCACCGATGCAC
AAACGCGCGAAGCCATCACACTGATCGCCCGGCTGGAGCCCAAACCCGGGCGCCGCTTCATCGACGTGGAGCGCAATATT
GTGGTGCCCGACGTGTTGGTGGTGGCCGCAGGCAAGGCCCGCAATGGCATCAACCCGCAGTTCCGCGTCATGCTCAACCC
CGAGGTCATGCCCAAGCTGCGGGTGCACGACATTTATGCCAACGTGCTGCGCAACCACCGCGGTGGCGGCAAAGACAGCG
CCAGTTACGCCGGCCTGCAGCAGCGCCTGCAAGAGGCCCGCTGGTTCATCAAGAACATCCAGCAGCGCTTTGACACCATC
CTGCGCGTCAGCACGGCCATTGTGGAGCGACAAAAGGGCTTCTTCTCCCACGGCGAGATGGCCATGCGCCCACTGGTGCT
GCGTGAGATTGCGGATGAGCTGGGTTTGCACGAGTCCACCATCAGCCGCGTCACCACCGCCAAATACATGGCCACGCCGT
TTGGCACCTTTGAGCTGAAGTACTTCTTTGGCTCTGGCCTGGGCACCGAGTCTGGCGGCAACGCGTCCAGCACCGCCGTG
CGTGCGCTGATCAAGCAATTCATCAGCGCCGAGAGCGACAAGAAGCCCTTGAGCGATAACCAGATTTCCGAAATGCTCAA
AGAGCAGGGCATTGAATGCGCCCGCCGCACCGTGGCCAAATACCGTGAGGGGCTGAAGATTGCTCCCGCTTCACTGAGGA
AGGCCCTATGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(146-359)

Sigma-54, DNA binding domain (Sigma54_DBD)

(379-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.642

100

0.515