Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HYO64_RS10365 Genome accession   NZ_CP058729
Coordinates   2154505..2154885 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2149505..2159885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS10335 tadA 2149624..2150127 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  HYO64_RS10340 - 2150134..2151258 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  HYO64_RS10345 ung 2151255..2151968 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  HYO64_RS10350 - 2152019..2152615 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  HYO64_RS10355 gspK 2152845..2153804 (-) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  HYO64_RS10360 xcpW 2153804..2154505 (-) 702 WP_000594575.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HYO64_RS10365 xcpV 2154505..2154885 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  HYO64_RS10370 - 2154875..2155429 (-) 555 WP_000841373.1 type II secretion system protein -
  HYO64_RS10375 - 2155439..2156047 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  HYO64_RS10380 - 2156085..2156858 (-) 774 WP_005110997.1 TatD family hydrolase -
  HYO64_RS10385 - 2156876..2157217 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  HYO64_RS10390 - 2157229..2158209 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  HYO64_RS10395 kdsB 2158221..2158982 (-) 762 WP_114154033.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=465067 HYO64_RS10365 WP_000836911.1 2154505..2154885(-) (xcpV) [Acinetobacter baumannii strain M164-3]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=465067 HYO64_RS10365 WP_000836911.1 2154505..2154885(-) (xcpV) [Acinetobacter baumannii strain M164-3]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1