Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HUI94_RS12905 Genome accession   NZ_CP055276
Coordinates   2739293..2740813 (-) Length   506 a.a.
NCBI ID   WP_218400052.1    Uniprot ID   -
Organism   Enterobacter mori strain CX01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2734293..2745813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUI94_RS12895 (HUI94_12875) hdfR 2737985..2738806 (-) 822 WP_042719103.1 HTH-type transcriptional regulator HdfR -
  HUI94_RS12900 (HUI94_12880) - 2738925..2739263 (+) 339 WP_008501577.1 DUF413 domain-containing protein -
  HUI94_RS12905 (HUI94_12885) comM 2739293..2740813 (-) 1521 WP_218400052.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HUI94_RS12910 (HUI94_12890) ilvL 2741155..2741253 (+) 99 WP_001311244.1 ilv operon leader peptide -
  HUI94_RS12920 (HUI94_12895) ilvG 2741393..2743039 (+) 1647 WP_042719101.1 acetolactate synthase 2 catalytic subunit -
  HUI94_RS12925 (HUI94_12900) ilvM 2743036..2743299 (+) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  HUI94_RS12930 (HUI94_12905) ilvE 2743318..2744247 (+) 930 WP_014885677.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55080.01 Da        Isoelectric Point: 6.8206

>NTDB_id=457347 HUI94_RS12905 WP_218400052.1 2739293..2740813(-) (comM) [Enterobacter mori strain CX01]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELPEPEECDDEVTDVPDDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTALQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGMLRQTGIQS
ESSANVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNGEDAEWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=457347 HUI94_RS12905 WP_218400052.1 2739293..2740813(-) (comM) [Enterobacter mori strain CX01]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTGATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCAGGACTCACGCTTGTCGGGCTACCGGAAACGACGGTTAAAGAGGCGAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTACCCAAAGAGGGGGGACGA
TACGATTTACCTATCGCGATTGCGCTTCTCGCGGCCTCTGAGCAGCTTAATACAACCAGGCTAGGCTCGTACGAGTTCGT
GGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCCATATCCGGAGCGCTGGAGGCAATCCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAGGTGAGTCTTATTGCAGAAAAGGGATGCCTTATAGCGGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGGCGACATGAGCTGCCCGAACCGGAGGAGTGTGACGATGAGGTAACGGATGTACC
AGATGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATCACGGCAGCGGGTGGACACAATCTTC
TGCTGATTGGCCCACCGGGTACGGGTAAGACCATGCTGGCGAGCAGGCTGAGTGGGTTGCTCCCACCGCTTAATAATCAT
GAAGCGCTGGAGAGCGCCGCGATATATAGCCTGATCGGTTCTACGGCGCTGCAAAAACAGTGGCGTCGACGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCGCTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCGGGTGAGATTTCACTGGCGC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAATTTGAGCGCCGTGTGCTGGATGCACTGAGGGAACCCATTGAATCC
GGCGAGATACATATCTCACGCACGCGTGCAAAAATAAGCTATCCTGCAAGGTTCCAGCTCGTCGCGGCGATGAACCCCAG
CCCCACGGGACACTATCAGGGGAATCATAACCGCTGCACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCCGGCC
CGTTTCTCGATCGTTTCGATTTATCACTGGAAATCCCGCTTCCGCCGCCTGGCATGCTCAGGCAGACGGGTATACAGAGT
GAAAGCTCTGCGAATGTTCGCGAGCGGGTTATCGCGGCGCAGGCGCGACAGTATGCTCGTCAGAACAGACTGAATGCGCG
GCTGGATAATGCCGGGATCCGACAGTTTTGTTCACTTAACGGTGAGGATGCGGAGTGGCTGGAAGAGACGTTGACGCGAT
TTGGGCTGTCCATACGTGCGTGGCAGCGTCTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGCTGTACTGACATT
GAAAGGAAACATTTGCAGGAAGCGCTGAGCTATCGCGCTATCGACCGTTTGCTACTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.546

100

0.589
  comM Vibrio campbellii strain DS40M4

58.929

99.605

0.587
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443