Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HU689_RS20290 Genome accession   NZ_CP055159
Coordinates   4580816..4582336 (+) Length   506 a.a.
NCBI ID   WP_096142468.1    Uniprot ID   -
Organism   Shewanella algae strain 2NE11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4575816..4587336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU689_RS20265 (HU689_20270) - 4576677..4577753 (-) 1077 WP_170946751.1 ABC transporter substrate-binding protein -
  HU689_RS20270 (HU689_20275) - 4577835..4578083 (-) 249 WP_025010076.1 hypothetical protein -
  HU689_RS20275 (HU689_20280) - 4578239..4579054 (-) 816 WP_096142467.1 EAL domain-containing protein -
  HU689_RS20280 (HU689_20285) - 4579373..4580170 (+) 798 WP_025010078.1 winged helix-turn-helix domain-containing protein -
  HU689_RS20285 (HU689_20290) - 4580158..4580658 (+) 501 WP_025010079.1 hypothetical protein -
  HU689_RS20290 (HU689_20295) comM 4580816..4582336 (+) 1521 WP_096142468.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HU689_RS20295 (HU689_20300) - 4582436..4583332 (+) 897 WP_096142469.1 LysR substrate-binding domain-containing protein -
  HU689_RS20300 (HU689_20305) phnX 4583435..4584244 (-) 810 WP_096142470.1 phosphonoacetaldehyde hydrolase -
  HU689_RS20305 (HU689_20310) - 4584232..4585359 (-) 1128 WP_044735374.1 phosphonoacetaldehyde reductase -
  HU689_RS20310 (HU689_20315) phnE 4585378..4586181 (-) 804 WP_096142471.1 phosphonate ABC transporter, permease protein PhnE -
  HU689_RS20315 (HU689_20320) phnC 4586175..4587002 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54427.87 Da        Isoelectric Point: 8.7098

>NTDB_id=456473 HU689_RS20290 WP_096142468.1 4580816..4582336(+) (comM) [Shewanella algae strain 2NE11]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSDA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=456473 HU689_RS20290 WP_096142468.1 4580816..4582336(+) (comM) [Shewanella algae strain 2NE11]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTAGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TAAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAGGGTGGACGT
TACGACCTTCCTATTGCCATTGGCATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATCATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTATTGCCACAGGATAACCGCAGTGAGGCCGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCACGGGCAACAAACCCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCAAA
GCCACACTCGAGTGATTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCGCTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGTGCTCCGCACCACACCAGCTCCGCCATCTCATTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCACTGGCTCACCTGGGAGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTCATCGCCGC
CATGAATCCCAGCCCCTGTGGAGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATAGAGGTGCCAAAACTCCCGCCAGGCGCCTTGACTTCAGATGCG
GCGCAGGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTAGCGGCAGCGCGGGAACTACAACTCAGCCGCGCCGGCGTACT
CAATAGCCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCT
ATGGTCGAGCGACGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

54.883

100

0.555
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

100

0.435