Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BPTD_RS18630 Genome accession   NC_017223
Coordinates   3908510..3909010 (+) Length   166 a.a.
NCBI ID   WP_003806953.1    Uniprot ID   A0AAI9J3I7
Organism   Bordetella pertussis CS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3903510..3914010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPTD_RS18620 (BPTD_3605) uvrA 3904079..3906937 (-) 2859 WP_010925694.1 excinuclease ABC subunit UvrA -
  BPTD_RS18625 (BPTD_3606) - 3907093..3908277 (+) 1185 WP_014486109.1 MFS transporter -
  BPTD_RS18630 (BPTD_3607) ssb 3908510..3909010 (+) 501 WP_003806953.1 single-stranded DNA-binding protein Machinery gene
  BPTD_RS18635 (BPTD_3608) - 3909183..3911372 (+) 2190 WP_010931577.1 TonB-dependent siderophore receptor -
  BPTD_RS18640 (BPTD_3609) - 3911403..3911906 (+) 504 WP_023852866.1 2,4'-dihydroxyacetophenone dioxygenase family protein -
  BPTD_RS21390 (BPTD_3610) - 3912039..3912613 (+) 575 Protein_3687 aldolase/citrate lyase family protein -
  BPTD_RS18655 (BPTD_3611) - 3912642..3913658 (+) 1017 WP_003806959.1 tripartite tricarboxylate transporter substrate-binding protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18100.09 Da        Isoelectric Point: 5.9609

>NTDB_id=45636 BPTD_RS18630 WP_003806953.1 3908510..3909010(+) (ssb) [Bordetella pertussis CS]
MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDSGGDSGGGYGGGYDDAPRQQRAPAQRPAAAPQRPAPQAAPAANLADM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=45636 BPTD_RS18630 WP_003806953.1 3908510..3909010(+) (ssb) [Bordetella pertussis CS]
ATGGCATCCGTCAACAAAGTCATTCTCGTCGGCAATCTGGGTCGCGACCCGGAAGTGCGTTACAGCCCGGATGGGGCGGC
CATCTGCAACGTGTCGATCGCCACGACCTCGCAATGGAAGGACAAGGCCAGCGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAAATCGCGGGCGAATACCTGAAGAAGGGGCGTTCGGTCTACATCGAGGGC
CGCCTGAAGACCCGCAAATGGCAAGACAAGGACACCGGCGCCGACCGCTACAGCACCGAAATCGTGGCCGACCAGATGCA
GATGCTGGGCGGGCGCGATAGCGGCGGCGACAGCGGCGGCGGTTACGGCGGTGGCTACGACGACGCACCGCGCCAGCAGC
GCGCCCCGGCCCAGCGCCCGGCGGCCGCCCCGCAGCGCCCCGCGCCGCAGGCCGCGCCGGCCGCCAACCTGGCCGACATG
GACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.688

100

0.59
  ssb Neisseria meningitidis MC58

52.778

100

0.572
  ssb Glaesserella parasuis strain SC1401

51.63

100

0.572
  ssb Neisseria gonorrhoeae MS11

51.667

100

0.56

Multiple sequence alignment