Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HR084_RS20810 Genome accession   NZ_CP054177
Coordinates   4084636..4085154 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain JCL16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4079636..4090154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS20780 (HR084_20780) yyaJ 4080139..4081494 (+) 1356 WP_029318525.1 MFS transporter -
  HR084_RS20785 (HR084_20785) maa 4081528..4082082 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  HR084_RS20790 (HR084_20790) yyaH 4082100..4082480 (-) 381 WP_003244460.1 VOC family protein -
  HR084_RS20795 (HR084_20795) ccpB 4082536..4083471 (-) 936 WP_038429968.1 transcriptional regulator CcpB -
  HR084_RS20800 (HR084_20800) xth 4083530..4084288 (-) 759 WP_038429969.1 exodeoxyribonuclease III -
  HR084_RS20805 (HR084_20805) rpsR 4084353..4084592 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  HR084_RS20810 (HR084_20810) ssbA 4084636..4085154 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  HR084_RS20815 (HR084_20815) rpsF 4085195..4085482 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  HR084_RS20820 (HR084_20820) ychF 4085593..4086693 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  HR084_RS20825 (HR084_20825) yyaE 4086820..4088823 (-) 2004 WP_038429970.1 molybdopterin-dependent oxidoreductase -
  HR084_RS20830 (HR084_20830) yyzM 4088874..4089080 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=451368 HR084_RS20810 WP_003219228.1 4084636..4085154(-) (ssbA) [Bacillus subtilis strain JCL16]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=451368 HR084_RS20810 WP_003219228.1 4084636..4085154(-) (ssbA) [Bacillus subtilis strain JCL16]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378