Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HNV93_RS16905 Genome accession   NZ_CP053717
Coordinates   3469752..3470396 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain A2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3464752..3475396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNV93_RS16875 - 3465201..3465542 (-) 342 WP_032876795.1 hypothetical protein -
  HNV93_RS16885 degQ 3466008..3466148 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  HNV93_RS16890 - 3466356..3467216 (+) 861 WP_142925231.1 polyprenyl synthetase family protein -
  HNV93_RS16895 comX 3467185..3467358 (+) 174 WP_012118314.1 competence pheromone ComX -
  HNV93_RS16900 - 3467372..3469671 (+) 2300 Protein_3324 histidine kinase -
  HNV93_RS16905 comA 3469752..3470396 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  HNV93_RS16910 - 3470418..3470801 (+) 384 WP_007613430.1 hotdog fold thioesterase -
  HNV93_RS16915 mnhG 3470841..3471215 (-) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  HNV93_RS16920 - 3471199..3471483 (-) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  HNV93_RS16925 - 3471483..3471959 (-) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  HNV93_RS16930 - 3471965..3473446 (-) 1482 WP_032876804.1 Na+/H+ antiporter subunit D -
  HNV93_RS16935 - 3473439..3473780 (-) 342 WP_032876807.1 Na(+)/H(+) antiporter subunit C -
  HNV93_RS16940 - 3473780..3474211 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=446604 HNV93_RS16905 WP_003152052.1 3469752..3470396(+) (comA) [Bacillus velezensis strain A2]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=446604 HNV93_RS16905 WP_003152052.1 3469752..3470396(+) (comA) [Bacillus velezensis strain A2]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGTCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864