Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   HPC60_RS12345 Genome accession   NZ_CP053671
Coordinates   2425547..2426038 (-) Length   163 a.a.
NCBI ID   WP_023190262.1    Uniprot ID   A0AAW7J4W6
Organism   Lactococcus lactis subsp. lactis strain G121     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2420547..2431038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPC60_RS12345 (HPC60_07095) comX 2425547..2426038 (-) 492 WP_023190262.1 hypothetical protein Regulator
  HPC60_RS12350 (HPC60_07100) ezrA 2426294..2428024 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  HPC60_RS12355 (HPC60_07105) tsf 2428229..2429257 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  HPC60_RS12360 (HPC60_07110) rpsB 2429380..2430147 (-) 768 WP_023190261.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19732.65 Da        Isoelectric Point: 5.8952

>NTDB_id=446223 HPC60_RS12345 WP_023190262.1 2425547..2426038(-) (comX) [Lactococcus lactis subsp. lactis strain G121]
MTYYLEEEGFEILFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=446223 HPC60_RS12345 WP_023190262.1 2425547..2426038(-) (comX) [Lactococcus lactis subsp. lactis strain G121]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAATTCTATTTTCAGAAATGAAACCTATAGTCATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGAATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGAATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

76.074

100

0.761