Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | HHJ99_RS02525 | Genome accession | NZ_CP051643 |
| Coordinates | 489717..490784 (+) | Length | 355 a.a. |
| NCBI ID | WP_049402080.1 | Uniprot ID | - |
| Organism | Staphylococcus caprae strain SY333 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 484717..495784
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ99_RS02495 (HHJ99_02490) | - | 485136..486599 (+) | 1464 | WP_044466727.1 | rhomboid family intramembrane serine protease | - |
| HHJ99_RS02500 (HHJ99_02495) | - | 486580..486783 (+) | 204 | WP_002443096.1 | YqgQ family protein | - |
| HHJ99_RS02505 (HHJ99_02500) | - | 486780..487766 (+) | 987 | WP_002443095.1 | ROK family glucokinase | - |
| HHJ99_RS02510 (HHJ99_02505) | - | 487766..488089 (+) | 324 | WP_002443093.1 | MTH1187 family thiamine-binding protein | - |
| HHJ99_RS02515 (HHJ99_02510) | - | 488093..488716 (+) | 624 | WP_002443090.1 | MBL fold metallo-hydrolase | - |
| HHJ99_RS02520 (HHJ99_02515) | comGA | 488771..489745 (+) | 975 | WP_002443088.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| HHJ99_RS02525 (HHJ99_02520) | comGB | 489717..490784 (+) | 1068 | WP_049402080.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| HHJ99_RS02530 (HHJ99_02525) | comGC | 490798..491115 (+) | 318 | WP_002443081.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| HHJ99_RS02535 (HHJ99_02530) | comGD | 491105..491542 (+) | 438 | WP_037541478.1 | competence type IV pilus minor pilin ComGD | - |
| HHJ99_RS02540 (HHJ99_02535) | - | 491529..491822 (+) | 294 | WP_002443078.1 | hypothetical protein | - |
| HHJ99_RS02545 (HHJ99_02540) | - | 491809..492237 (+) | 429 | WP_232018998.1 | competence type IV pilus minor pilin ComGF | - |
| HHJ99_RS02550 (HHJ99_02545) | - | 492406..492915 (+) | 510 | WP_002443074.1 | shikimate kinase | - |
| HHJ99_RS02555 (HHJ99_02550) | gcvT | 493141..494232 (+) | 1092 | WP_002443072.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| HHJ99_RS02560 (HHJ99_02555) | gcvPA | 494250..495596 (+) | 1347 | WP_002443070.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 41864.99 Da Isoelectric Point: 9.8952
>NTDB_id=440203 HHJ99_RS02525 WP_049402080.1 489717..490784(+) (comGB) [Staphylococcus caprae strain SY333]
MKRLSTNIFKFKKRKNLTEPQLIELLQRLNQLLQNGFTLFESFSFLNLHFPYKNKTIGQNIIESLQTGATCYEILKIIGY
PEIILNQIKFAEQYGKLENVITDSIDYMKRNYKAKKALIKTIQYPIVLISIFLVMLIVLNMTVIPQFQQLYSTMNVELST
FQNILTFIITKLPNFLFLFLMLSMIIYFSFITLLNKLPIDKKIDYILKIPILNSYYKIYRTYQFSNELSLFYKNGVSLQS
IVFIYQNEQNNEFFKYLGSQLLEGADNGRTLPLILKNLKCFKNDLIKFIEQGEKSGKLDIELKLYSQMLLQHFEDKVIKQ
TKLIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
MKRLSTNIFKFKKRKNLTEPQLIELLQRLNQLLQNGFTLFESFSFLNLHFPYKNKTIGQNIIESLQTGATCYEILKIIGY
PEIILNQIKFAEQYGKLENVITDSIDYMKRNYKAKKALIKTIQYPIVLISIFLVMLIVLNMTVIPQFQQLYSTMNVELST
FQNILTFIITKLPNFLFLFLMLSMIIYFSFITLLNKLPIDKKIDYILKIPILNSYYKIYRTYQFSNELSLFYKNGVSLQS
IVFIYQNEQNNEFFKYLGSQLLEGADNGRTLPLILKNLKCFKNDLIKFIEQGEKSGKLDIELKLYSQMLLQHFEDKVIKQ
TKLIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=440203 HHJ99_RS02525 WP_049402080.1 489717..490784(+) (comGB) [Staphylococcus caprae strain SY333]
GTGAAGAGATTGTCGACAAATATATTTAAATTTAAAAAGCGAAAAAATCTTACCGAGCCTCAGTTAATTGAATTACTTCA
ACGACTTAATCAATTATTACAAAATGGCTTTACTTTATTTGAAAGTTTCAGCTTTCTAAATTTACACTTCCCTTATAAAA
ATAAAACGATAGGTCAAAATATCATTGAATCATTACAAACAGGCGCAACATGTTATGAAATTTTAAAAATAATAGGCTAT
CCTGAAATTATTCTTAATCAAATTAAATTCGCAGAACAATATGGAAAACTTGAGAATGTGATAACAGATTCAATTGATTA
TATGAAGAGGAATTATAAAGCTAAAAAAGCACTCATTAAAACCATACAATATCCCATAGTATTAATTAGCATCTTCCTAG
TGATGCTTATCGTTTTGAATATGACAGTTATTCCACAGTTCCAACAATTATATTCTACGATGAATGTAGAATTATCTACC
TTTCAAAATATACTTACTTTTATCATAACGAAACTTCCAAATTTTTTATTTCTATTTCTAATGTTATCAATGATCATTTA
CTTTTCATTCATCACACTTTTAAATAAATTACCCATTGATAAAAAAATAGATTACATCCTCAAAATTCCAATTTTAAACT
CTTATTACAAAATATATAGAACTTATCAATTTTCCAATGAACTTTCATTATTCTATAAAAACGGTGTTAGTCTTCAAAGC
ATCGTCTTTATCTATCAAAATGAACAAAACAACGAATTCTTTAAATACTTGGGAAGTCAATTATTAGAAGGAGCTGATAA
CGGAAGAACACTTCCGCTTATATTAAAAAATTTAAAGTGCTTTAAAAATGATTTAATAAAATTTATCGAGCAAGGAGAAA
AAAGTGGAAAGTTAGATATAGAGCTTAAATTATATAGTCAAATGCTATTGCAACATTTTGAAGATAAAGTCATAAAACAA
ACAAAATTGATCCAACCAGTTATTTTCTTTATTTTAGGCTTGTTTATTGTGTCTTTATATCTCGTCATCATGCTACCTAT
GTTTGAACTTATGCAAACGATTAAGTAA
GTGAAGAGATTGTCGACAAATATATTTAAATTTAAAAAGCGAAAAAATCTTACCGAGCCTCAGTTAATTGAATTACTTCA
ACGACTTAATCAATTATTACAAAATGGCTTTACTTTATTTGAAAGTTTCAGCTTTCTAAATTTACACTTCCCTTATAAAA
ATAAAACGATAGGTCAAAATATCATTGAATCATTACAAACAGGCGCAACATGTTATGAAATTTTAAAAATAATAGGCTAT
CCTGAAATTATTCTTAATCAAATTAAATTCGCAGAACAATATGGAAAACTTGAGAATGTGATAACAGATTCAATTGATTA
TATGAAGAGGAATTATAAAGCTAAAAAAGCACTCATTAAAACCATACAATATCCCATAGTATTAATTAGCATCTTCCTAG
TGATGCTTATCGTTTTGAATATGACAGTTATTCCACAGTTCCAACAATTATATTCTACGATGAATGTAGAATTATCTACC
TTTCAAAATATACTTACTTTTATCATAACGAAACTTCCAAATTTTTTATTTCTATTTCTAATGTTATCAATGATCATTTA
CTTTTCATTCATCACACTTTTAAATAAATTACCCATTGATAAAAAAATAGATTACATCCTCAAAATTCCAATTTTAAACT
CTTATTACAAAATATATAGAACTTATCAATTTTCCAATGAACTTTCATTATTCTATAAAAACGGTGTTAGTCTTCAAAGC
ATCGTCTTTATCTATCAAAATGAACAAAACAACGAATTCTTTAAATACTTGGGAAGTCAATTATTAGAAGGAGCTGATAA
CGGAAGAACACTTCCGCTTATATTAAAAAATTTAAAGTGCTTTAAAAATGATTTAATAAAATTTATCGAGCAAGGAGAAA
AAAGTGGAAAGTTAGATATAGAGCTTAAATTATATAGTCAAATGCTATTGCAACATTTTGAAGATAAAGTCATAAAACAA
ACAAAATTGATCCAACCAGTTATTTTCTTTATTTTAGGCTTGTTTATTGTGTCTTTATATCTCGTCATCATGCTACCTAT
GTTTGAACTTATGCAAACGATTAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.157 |
100 |
0.493 |
| comGB | Staphylococcus aureus N315 |
49.157 |
100 |
0.493 |