Detailed information NTG0439595

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HG580_RS00190
• Genome accession: NZ_CP051536
• Coordinates: 32484..33539 (+)
• Length: 351 a.a.
• NCBI ID: WP_202146369.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-007
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27484..38539

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG580_RS00160	-	27900..28313 (+)	414	WP_001023005.1	universal stress protein	-
HG580_RS00165	-	28328..28603 (+)	276	WP_202145896.1	ATP-dependent Clp protease adaptor ClpS	-
HG580_RS00170	-	28603..30825 (+)	2223	WP_202145897.1	ATP-dependent Clp protease ATP-binding subunit	-
HG580_RS00175	panD	30815..31165 (+)	351	WP_128033521.1	aspartate 1-decarboxylase	-
HG580_RS00180	-	31176..31469 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HG580_RS00185	-	31469..32476 (+)	1008	WP_202146370.1	PDZ domain-containing protein	-
HG580_RS00190	comB6	32484..33539 (+)	1056	WP_202146369.1	P-type conjugative transfer protein TrbL	Machinery gene
HG580_RS00195	comB7	33555..33668 (+)	114	WP_001217868.1	hypothetical protein	Machinery gene
HG580_RS00200	comB8	33665..34408 (+)	744	WP_202145898.1	virB8 family protein	Machinery gene
HG580_RS00205	comB9	34408..35367 (+)	960	WP_202145899.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG580_RS00210	comB10	35360..36496 (+)	1137	WP_202145900.1	DNA type IV secretion system protein ComB10	Machinery gene
HG580_RS00215	-	36566..37978 (+)	1413	WP_202145901.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39714.64 Da
• Isoelectric Point: 8.8165

>NTDB_id=439595 HG580_RS00190 WP_202146369.1 32484..33539(+) (comB6) [Helicobacter pylori strain LIM-007]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHVQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=439595 HG580_RS00190 WP_202146369.1 32484..33539(+) (comB6) [Helicobacter pylori strain LIM-007]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCGCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGTGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTATTATTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAATCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterProScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.006	100	0.98