Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HG580_RS00085 Genome accession   NZ_CP051536
Coordinates   11277..11558 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain LIM-007     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6277..16558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG580_RS00065 groES 6853..7209 (-) 357 WP_000671934.1 co-chaperone GroES -
  HG580_RS00070 dnaG 7485..9164 (+) 1680 WP_202145884.1 DNA primase -
  HG580_RS00075 - 9161..10213 (+) 1053 WP_202145885.1 MnmA/TRMU family protein -
  HG580_RS00080 - 10304..11131 (+) 828 WP_202145886.1 DUF5718 family protein -
  HG580_RS00085 comB2 11277..11558 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HG580_RS00090 comB3 11558..11821 (+) 264 WP_000584955.1 hypothetical protein Machinery gene
  HG580_RS00095 comB4 11823..14186 (+) 2364 WP_202145887.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HG580_RS00105 - 14417..15847 (+) 1431 WP_202145888.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=439592 HG580_RS00085 WP_001272686.1 11277..11558(+) (comB2) [Helicobacter pylori strain LIM-007]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=439592 HG580_RS00085 WP_001272686.1 11277..11558(+) (comB2) [Helicobacter pylori strain LIM-007]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGCTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989