Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HG567_RS06560 Genome accession   NZ_CP051500
Coordinates   1380934..1382247 (-) Length   437 a.a.
NCBI ID   WP_202139568.1    Uniprot ID   -
Organism   Helicobacter pylori strain PUNO-003     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1375934..1387247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG567_RS06530 (HG567_06510) nadC 1376397..1377218 (-) 822 WP_202163768.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HG567_RS06535 (HG567_06515) nadA 1377218..1378228 (-) 1011 WP_202139564.1 quinolinate synthase NadA -
  HG567_RS06540 (HG567_06520) - 1378218..1379021 (-) 804 WP_202139565.1 phosphatidylserine decarboxylase -
  HG567_RS06545 (HG567_06525) - 1379018..1379521 (-) 504 WP_202139566.1 helix-turn-helix domain-containing protein -
  HG567_RS06550 (HG567_06530) - 1379534..1380028 (-) 495 WP_162971963.1 hypothetical protein -
  HG567_RS06555 (HG567_06535) mqnP 1380021..1380863 (-) 843 WP_237392954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HG567_RS06560 (HG567_06540) comEC/comE3 1380934..1382247 (-) 1314 WP_202139568.1 ComEC/Rec2 family competence protein Machinery gene
  HG567_RS06565 (HG567_06545) - 1382244..1383710 (-) 1467 WP_202139569.1 replicative DNA helicase -
  HG567_RS06570 (HG567_06550) - 1383721..1385121 (-) 1401 WP_202139570.1 NAD(P)H-hydrate dehydratase -
  HG567_RS06575 (HG567_06555) crdS 1385124..1386326 (-) 1203 WP_202164031.1 copper-sensing histidine kinase CrdS -
  HG567_RS06580 (HG567_06560) crdR 1386292..1386933 (-) 642 WP_202139571.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50176.08 Da        Isoelectric Point: 9.7215

>NTDB_id=439189 HG567_RS06560 WP_202139568.1 1380934..1382247(-) (comEC/comE3) [Helicobacter pylori strain PUNO-003]
MKDKTFQGAFELLTTPKEYLWCGVVLSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRDFIDSTHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKCYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLARSFQAISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDRLLSMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=439189 HG567_RS06560 WP_202139568.1 1380934..1382247(-) (comEC/comE3) [Helicobacter pylori strain PUNO-003]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCGACTTCATTGATAGCACTCATTCAAGCGCTTTAGTAGGGAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAATGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
TTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATTT
TTTTATTCTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGCCATAAGCTTAAGC
GTGTTGGTGTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATCGCC
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.652

100

0.957