Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HC660_RS12245 Genome accession   NZ_CP051464
Coordinates   2349883..2350218 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus mojavensis strain UCMB5075     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2344883..2355218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC660_RS12225 (HC660_23370) gcvT 2345476..2346564 (-) 1089 WP_168748224.1 glycine cleavage system aminomethyltransferase GcvT -
  HC660_RS12230 (HC660_23380) - 2347008..2348681 (+) 1674 WP_168748225.1 SNF2-related protein -
  HC660_RS12235 (HC660_23390) - 2348702..2349496 (+) 795 WP_168748226.1 YqhG family protein -
  HC660_RS12240 (HC660_23400) sinI 2349676..2349849 (+) 174 WP_010334916.1 anti-repressor SinI family protein Regulator
  HC660_RS12245 (HC660_23410) sinR 2349883..2350218 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  HC660_RS12250 (HC660_23420) tasA 2350306..2351091 (-) 786 WP_168748227.1 biofilm matrix protein TasA -
  HC660_RS12255 (HC660_23430) - 2351156..2351740 (-) 585 WP_168748228.1 signal peptidase I -
  HC660_RS12260 (HC660_23440) tapA 2351712..2352473 (-) 762 WP_168748229.1 amyloid fiber anchoring/assembly protein TapA -
  HC660_RS12265 (HC660_23450) - 2352750..2353073 (+) 324 WP_168748230.1 YqzG/YhdC family protein -
  HC660_RS12270 (HC660_23460) - 2353116..2353295 (-) 180 WP_003236949.1 YqzE family protein -
  HC660_RS12275 (HC660_23470) comGG 2353367..2353741 (-) 375 WP_168748231.1 competence type IV pilus minor pilin ComGG Machinery gene
  HC660_RS12280 (HC660_23480) comGF 2353742..2354125 (-) 384 WP_168748232.1 competence type IV pilus minor pilin ComGF Machinery gene
  HC660_RS12285 (HC660_23490) comGE 2354151..2354498 (-) 348 WP_168748233.1 competence type IV pilus minor pilin ComGE Machinery gene
  HC660_RS12290 (HC660_23500) comGD 2354482..2354913 (-) 432 WP_168748234.1 competence type IV pilus minor pilin ComGD Machinery gene
  HC660_RS12295 (HC660_23510) comGC 2354903..2355199 (-) 297 WP_168748235.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=438487 HC660_RS12245 WP_003226345.1 2349883..2350218(+) (sinR) [Bacillus mojavensis strain UCMB5075]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=438487 HC660_RS12245 WP_003226345.1 2349883..2350218(+) (sinR) [Bacillus mojavensis strain UCMB5075]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1