Detailed information NTG0429038

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: G6Z49_RS19165
• Genome accession: NZ_CP049957
• Coordinates: 4167837..4169264 (-)
• Length: 475 a.a.
• NCBI ID: WP_052125644.1
• Uniprot ID: A0A157MNK8
• Organism: Bordetella trematum strain E202
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4162837..4174264

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6Z49_RS19140	-	4163592..4164221 (+)	630	WP_025514979.1	LysE family transporter	-
G6Z49_RS19145	-	4164245..4165852 (+)	1608	WP_025514978.1	peptide chain release factor 3	-
G6Z49_RS19150	-	4165887..4166546 (+)	660	WP_025514977.1	hypothetical protein	-
G6Z49_RS19155	bfr	4166613..4167089 (-)	477	WP_025514976.1	bacterioferritin	-
G6Z49_RS19160	-	4167449..4167745 (-)	297	WP_025514975.1	(2Fe-2S)-binding protein	-
G6Z49_RS19165	rpoN/rpoN1	4167837..4169264 (-)	1428	WP_052125644.1	RNA polymerase factor sigma-54	Machinery gene
G6Z49_RS19170	-	4169263..4169910 (+)	648	WP_082875244.1	hypothetical protein	-
G6Z49_RS19175	leuA	4170288..4171991 (+)	1704	WP_165720871.1	2-isopropylmalate synthase	-
G6Z49_RS19180	-	4172043..4173332 (-)	1290	WP_025514971.1	amidase	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 51921.05 Da
• Isoelectric Point: 4.9939

>NTDB_id=429038 G6Z49_RS19165 WP_052125644.1 4167837..4169264(-) (rpoN/rpoN1) [Bordetella trematum strain E202]
MQNIVPMTRPALELRASQHLALTPQLQQSIRLLQLSALELEAEIAQALADNPMLERAEDDVAAPQDAEAASGESAAAELE
DAWEASQRRLDEAGGGDDDLPQAARETTLREHLLGQLALTRAAPRDAALTALLIDELDDNGYLASPLEEIRQWLPVELDI
DDDELRAALRLLQSFEPPGVGARDLAECLSLQLRQPDTACLPEAADVQVLECARRLCAGHLPLLAAGNPQRLREALAVDD
ATLRAARALIVRLDPRPGRAWTAPAADFAVPDVLVHRRAAGWQAVLNPAVMPRLHINQHYANLLANRRESAYASLQGQLQ
QARWMIRNVEQRFDTILRVSQAIVAHQAAFFSEGPAAMRPLILKDIAGELGLHESTISRATAQKFMLTPYGTMELKRFFG
SGVATESGETTSATAVQAHIRQMVAEEEPGRPLSDSQLVQQLADKGIVIARRTVAKYRELLRIAPATVRRAQAGR

Nucleotide

• Length: 1428 bp

>NTDB_id=429038 G6Z49_RS19165 WP_052125644.1 4167837..4169264(-) (rpoN/rpoN1) [Bordetella trematum strain E202]
ATGCAAAATATTGTACCTATGACTCGTCCTGCGTTAGAACTTCGCGCTTCACAGCATTTGGCATTGACGCCACAGCTGCA
ACAGTCCATTCGATTGTTGCAGCTTTCGGCGCTGGAGCTGGAGGCCGAGATTGCGCAGGCCCTGGCCGACAATCCCATGC
TGGAGCGCGCCGAGGACGATGTGGCCGCGCCGCAGGATGCCGAGGCGGCTTCGGGCGAGTCCGCAGCCGCCGAGCTGGAA
GATGCCTGGGAGGCGTCGCAGCGGCGTCTGGACGAGGCGGGCGGCGGCGATGACGATCTGCCCCAGGCGGCGCGCGAGAC
GACGTTGCGCGAGCATTTGCTGGGTCAGCTGGCGCTCACTCGCGCTGCGCCGCGCGATGCCGCCCTGACCGCCCTGCTGA
TCGACGAACTGGACGACAACGGTTATCTGGCCTCGCCGCTGGAGGAAATCCGGCAGTGGTTGCCGGTCGAACTGGACATC
GACGACGACGAGCTGCGTGCCGCATTGCGACTGTTGCAGTCTTTCGAGCCGCCGGGCGTCGGCGCGCGCGATCTGGCCGA
GTGCCTGTCGCTGCAATTGCGCCAGCCGGATACCGCATGCCTGCCCGAGGCGGCCGACGTCCAGGTGCTGGAGTGCGCCA
GGCGACTGTGCGCCGGCCATTTGCCGCTGCTGGCTGCCGGCAACCCGCAGCGGCTGCGCGAGGCTCTGGCGGTGGATGAC
GCTACCCTGCGGGCTGCGCGCGCCCTGATCGTGCGCCTGGACCCGCGTCCGGGGCGGGCCTGGACGGCCCCGGCGGCCGA
TTTTGCCGTGCCCGATGTCCTGGTGCATCGCCGCGCCGCAGGATGGCAGGCGGTGCTCAATCCGGCGGTCATGCCGCGCC
TGCATATCAATCAGCATTACGCCAACCTGCTGGCGAACCGGCGCGAGAGCGCCTATGCCAGCCTGCAAGGCCAGTTGCAG
CAGGCGCGCTGGATGATACGCAACGTCGAGCAGCGGTTCGATACGATCCTGCGGGTATCGCAGGCCATCGTGGCGCATCA
GGCAGCCTTCTTCAGCGAAGGGCCTGCCGCGATGCGTCCTCTCATCCTCAAGGACATTGCCGGCGAACTGGGCCTGCACG
AGTCGACCATTTCGCGCGCCACCGCCCAGAAATTCATGCTCACGCCGTACGGGACCATGGAGCTCAAGCGTTTTTTCGGC
AGCGGCGTGGCGACCGAGAGCGGCGAGACGACGTCGGCCACGGCCGTGCAGGCGCATATCCGGCAGATGGTGGCCGAGGA
GGAGCCGGGCCGGCCGCTCTCGGATAGCCAGCTTGTCCAGCAGTTGGCCGACAAAGGCATCGTGATCGCCCGACGCACCG
TGGCGAAGTACCGTGAACTGCTGCGCATCGCGCCGGCGACGGTGCGGCGCGCTCAGGCAGGGCGTTGA

Domains

Predicted by InterproScan.

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

• Sigma-54, DNA binding domain (Sigma54_DBD) (315-470)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (103-300)

3D structure

• AlphaFold DB: A0A157MNK8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	49.407	100	0.526