Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   G4G26_RS16025 Genome accession   NZ_CP049924
Coordinates   3115287..3115931 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain So1b     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3110287..3120931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS15990 (G4G26_16045) mrpB 3111477..3111908 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  G4G26_RS15995 (G4G26_16050) mrpC 3111908..3112249 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  G4G26_RS16000 (G4G26_16055) mrpD 3112242..3113723 (+) 1482 WP_182932163.1 Na+/H+ antiporter subunit D -
  G4G26_RS16005 (G4G26_16060) mrpE 3113729..3114205 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  G4G26_RS16010 (G4G26_16065) mrpF 3114205..3114489 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  G4G26_RS16015 (G4G26_16070) mnhG 3114473..3114847 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  G4G26_RS16020 (G4G26_16075) yuxO 3114888..3115268 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  G4G26_RS16025 (G4G26_16080) comA 3115287..3115931 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  G4G26_RS16030 (G4G26_16085) comP 3116012..3118324 (-) 2313 WP_068947635.1 histidine kinase Regulator
  G4G26_RS16035 (G4G26_16090) comX 3118340..3118561 (-) 222 WP_014114983.1 competence pheromone ComX -
  G4G26_RS16040 (G4G26_16095) - 3118558..3119427 (-) 870 WP_015714626.1 polyprenyl synthetase family protein -
  G4G26_RS16045 (G4G26_16100) degQ 3119612..3119752 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  G4G26_RS16050 (G4G26_16105) - 3119974..3120099 (+) 126 WP_141770195.1 hypothetical protein -
  G4G26_RS16055 (G4G26_16110) - 3120214..3120582 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=428755 G4G26_RS16025 WP_003220716.1 3115287..3115931(-) (comA) [Bacillus subtilis strain So1b]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=428755 G4G26_RS16025 WP_003220716.1 3115287..3115931(-) (comA) [Bacillus subtilis strain So1b]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCGTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1