Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V753_RS01790 Genome accession   NZ_CP049904
Coordinates   333890..334327 (-) Length   145 a.a.
NCBI ID   WP_029325718.1    Uniprot ID   -
Organism   Bacillus velezensis strain GB03     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 328890..339327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V753_RS01765 (V753_01770) - 330068..331270 (+) 1203 WP_029325717.1 GTP-binding protein -
  V753_RS01770 (V753_01775) - 331335..332471 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  V753_RS01775 (V753_01780) - 332486..332920 (+) 435 WP_007609296.1 RDD family protein -
  V753_RS01780 (V753_01785) - 333038..333316 (+) 279 WP_373271686.1 YckD family protein -
  V753_RS01785 (V753_01790) nin/comJ 333471..333869 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  V753_RS01790 (V753_01795) nucA/comI 333890..334327 (-) 438 WP_029325718.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V753_RS01795 (V753_01800) hxlB 334685..335242 (-) 558 WP_007609301.1 6-phospho-3-hexuloisomerase -
  V753_RS01800 (V753_01805) hxlA 335239..335874 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  V753_RS01805 (V753_01810) - 336106..336468 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.31 Da        Isoelectric Point: 7.9203

>NTDB_id=428469 V753_RS01790 WP_029325718.1 333890..334327(-) (nucA/comI) [Bacillus velezensis strain GB03]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCQQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=428469 V753_RS01790 WP_029325718.1 333890..334327(-) (nucA/comI) [Bacillus velezensis strain GB03]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAAACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGTCGT
GAGCAATCTCTTAAACATGTACCTGTAAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTCAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACAAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634