Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   G8B44_RS03050 Genome accession   NZ_CP049688
Coordinates   605568..607850 (-) Length   760 a.a.
NCBI ID   WP_011528807.1    Uniprot ID   A0A660A6J4
Organism   Streptococcus pyogenes strain ABC245     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 600568..612850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G8B44_RS03035 (G8B44_03050) ileS 601566..604367 (+) 2802 WP_011528809.1 isoleucine--tRNA ligase -
  G8B44_RS03040 (G8B44_03055) - 604632..604934 (-) 303 WP_002983878.1 DUF1827 family protein -
  G8B44_RS03045 (G8B44_03060) - 604985..605440 (-) 456 WP_011528808.1 NUDIX hydrolase -
  G8B44_RS03050 (G8B44_03065) clpE 605568..607850 (-) 2283 WP_011528807.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  G8B44_RS03055 (G8B44_03070) - 608147..608377 (+) 231 WP_002983885.1 YkuJ family protein -
  G8B44_RS03060 (G8B44_03075) - 608504..609190 (+) 687 WP_002983887.1 amino acid ABC transporter permease -
  G8B44_RS03065 (G8B44_03080) - 609190..609924 (+) 735 WP_002983889.1 amino acid ABC transporter ATP-binding protein -
  G8B44_RS03070 (G8B44_03085) - 610072..611481 (+) 1410 WP_002983891.1 deoxyribodipyrimidine photo-lyase -

Sequence


Protein


Download         Length: 760 a.a.        Molecular weight: 84731.96 Da        Isoelectric Point: 5.1035

>NTDB_id=426751 G8B44_RS03050 WP_011528807.1 605568..607850(-) (clpE) [Streptococcus pyogenes strain ABC245]
MLCQNCNLNESTIHLYTSVNGKQRQVDLCQNCYQIMKSDPANSILNGLTPGYRAQDRSTSPFFDDFFGDLNNFRAFGNLP
NTPPTQAGQNGNGGGRYGGNYNGQRPAQPQTPNQQAKGLLEEFGINVTDIARNGNIDPVIGRDEEITRIIEILNRRTKNN
PVLIGEPGVGKTAVVEGLAQKIIDGTVPQKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRNRKDVILFIDEIHE
IVGAGSAGDGNMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILKGIQPKYEDYHH
VKYSPAAIEAAAHLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKEIDKRLIEAENLKAQATRDEDYERAAYFRDQ
ITKYKEMQAQKVDEQDIPIITEKTIEAIVEQKTNIPVGDLKEKEQSQLVNLANDLKAHVIGQDDAVDKIAKAIRRNRVGL
GTPNRPIGSFLFVGPTGVGKTELSKQLAIELFGSTNNMIRFDMSEYMEKHAVAKLVGAPPGYVGYEEAGQLTEQVRRNPY
SLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDTIIIMTSNAGTGKSEASVGFGAAREGRTSSVLGELSNFFS
PEFMNRFDGIIEFKALSKEHLLHIVDLMLEDVNERLGYNGIHLDVTQKVKEKLVDLGYDPKMGARPLRRTIQDYIEDAIT
DYYLEHPTEKQLRALMTNSENITIKAVKEGDSFLNEKSLD

Nucleotide


Download         Length: 2283 bp        

>NTDB_id=426751 G8B44_RS03050 WP_011528807.1 605568..607850(-) (clpE) [Streptococcus pyogenes strain ABC245]
ATGCTGTGTCAAAATTGTAATTTAAACGAATCTACTATTCATCTTTATACAAGTGTTAATGGAAAACAAAGACAGGTTGA
TCTCTGTCAAAATTGTTATCAAATCATGAAATCCGATCCTGCCAATTCTATTTTAAATGGCCTAACCCCAGGATATAGAG
CACAAGATAGATCCACAAGTCCTTTCTTTGATGACTTTTTTGGTGATTTGAATAATTTTAGAGCTTTTGGTAATCTTCCA
AATACCCCACCTACTCAGGCAGGGCAAAATGGAAATGGCGGAGGACGCTATGGTGGTAACTACAACGGACAACGACCTGC
TCAGCCACAAACACCAAATCAGCAAGCAAAGGGCTTGTTAGAAGAGTTTGGGATTAATGTCACAGATATTGCAAGAAATG
GTAATATTGATCCTGTTATTGGTCGTGACGAAGAGATTACACGCATTATCGAGATCCTCAACCGCCGTACTAAAAATAAT
CCTGTGCTAATTGGTGAGCCTGGAGTTGGTAAAACTGCTGTTGTAGAAGGTTTGGCTCAAAAAATTATTGATGGTACTGT
TCCTCAAAAACTCCAAGGCAAGCAAGTGATTCGTCTTGATGTGGTTAGCCTCGTTCAGGGAACAGGTATCCGTGGTCAGT
TTGAAGAGCGCATGCAAAAATTAATGGAAGAAATTCGCAATCGCAAGGATGTGATTCTCTTTATTGATGAAATTCATGAG
ATTGTCGGTGCTGGTTCTGCAGGAGACGGCAATATGGATGCTGGTAATATTTTAAAACCAGCCTTGGCCCGCGGTGAATT
GCAGTTGGTCGGCGCTACCACCTTAAATGAATACCGTATTATTGAAAAAGACGCTGCCTTAGAACGACGTATGCAACCCG
TTAAAGTTGATGAACCTTCTGTTGAGGAAACCATCACGATTTTAAAAGGTATCCAACCGAAATACGAAGACTATCATCAT
GTCAAATATAGCCCAGCCGCTATTGAAGCTGCTGCTCATTTATCTAACCGCTATATTCAAGACCGTTTTCTTCCTGATAA
GGCTATTGACCTTCTGGACGAAGCTGGTTCCAAAATGAATCTAACCCTCAACTTTGTTGATCCTAAAGAAATTGACAAAC
GTCTTATTGAAGCTGAGAATCTCAAGGCGCAAGCTACTCGAGACGAAGACTATGAACGCGCAGCTTATTTCCGCGATCAA
ATTACAAAATACAAAGAAATGCAGGCTCAAAAAGTCGATGAGCAAGATATTCCCATCATTACTGAAAAAACCATTGAAGC
TATTGTAGAGCAAAAAACTAATATTCCAGTTGGGGACTTAAAAGAAAAGGAACAGTCTCAACTCGTAAACTTAGCCAATG
ATCTGAAAGCACACGTGATCGGGCAAGACGATGCTGTTGATAAAATCGCTAAGGCTATTCGTCGTAACCGTGTGGGATTA
GGAACTCCAAATCGCCCTATTGGTTCTTTCTTATTCGTTGGACCGACTGGGGTTGGTAAAACTGAATTGTCTAAACAACT
AGCCATTGAACTCTTTGGTTCGACAAACAATATGATTCGCTTTGACATGTCCGAATACATGGAAAAACACGCTGTCGCCA
AATTAGTCGGGGCTCCTCCAGGTTATGTCGGCTATGAAGAAGCTGGACAGCTAACCGAACAAGTTCGTCGCAATCCTTAT
TCCCTTATTCTCTTAGATGAGGTGGAAAAAGCCCATCCTGACGTCATGCACATGTTCTTACAAGTTCTTGATGACGGTCG
CTTAACAGACGGCCAAGGGCGAACAGTCAGCTTCAAGGACACCATTATTATCATGACCTCTAATGCCGGAACAGGTAAAA
GCGAAGCTTCTGTCGGATTTGGTGCTGCTAGAGAAGGACGGACAAGTTCTGTCCTTGGTGAATTAAGCAACTTCTTCAGC
CCAGAGTTTATGAATCGTTTCGATGGTATTATTGAATTCAAAGCTTTATCTAAAGAACATTTGCTGCATATCGTTGATTT
AATGCTGGAAGATGTTAATGAGCGCTTAGGCTATAATGGGATTCATCTTGATGTGACACAAAAGGTCAAAGAAAAATTAG
TAGATTTAGGCTATGATCCTAAAATGGGCGCTCGGCCGCTCCGTCGTACTATCCAAGATTATATCGAAGATGCCATTACA
GACTATTATTTAGAACACCCAACTGAAAAACAGTTACGTGCACTGATGACAAACAGTGAAAACATCACGATTAAAGCTGT
TAAAGAGGGAGATTCTTTTCTTAACGAAAAGTCTCTAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A660A6J4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

84.626

98.421

0.833

  clpE Streptococcus pneumoniae Rx1

82.166

99.605

0.818

  clpE Streptococcus pneumoniae D39

82.166

99.605

0.818

  clpE Streptococcus pneumoniae R6

82.166

99.605

0.818

  clpE Streptococcus pneumoniae TIGR4

82.034

99.605

0.817

  clpC Lactococcus lactis subsp. cremoris KW2

76.965

97.105

0.747

  clpC Bacillus subtilis subsp. subtilis str. 168

51.442

86.711

0.446

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46

85.526

0.393

  clpC Streptococcus pneumoniae Rx1

47.84

82.237

0.393

  clpC Streptococcus pneumoniae D39

47.84

82.237

0.393

  clpC Streptococcus pneumoniae TIGR4

47.84

82.237

0.393

  clpC Streptococcus mutans UA159

47.573

81.316

0.387

  clpC Streptococcus thermophilus LMD-9

47.115

82.105

0.387

  clpC Streptococcus thermophilus LMG 18311

46.795

82.105

0.384