Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PmVP161_RS05730 Genome accession   NZ_CP048792
Coordinates   1247315..1247749 (-) Length   144 a.a.
NCBI ID   WP_061406215.1    Uniprot ID   Q9LA12
Organism   Pasteurella multocida strain VP161     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242315..1252749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PmVP161_RS05700 (PmVP161_1145) - 1242879..1243148 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  PmVP161_RS05705 (PmVP161_1146) yacG 1243148..1243351 (-) 204 WP_005722566.1 DNA gyrase inhibitor YacG -
  PmVP161_RS05710 (PmVP161_1147) coaE 1243362..1243982 (-) 621 WP_005722564.1 dephospho-CoA kinase -
  PmVP161_RS05715 (PmVP161_1148) - 1243997..1244719 (-) 723 WP_005722562.1 prepilin peptidase -
  PmVP161_RS05720 (PmVP161_1149) - 1244719..1245930 (-) 1212 WP_005722560.1 type II secretion system F family protein -
  PmVP161_RS05725 (PmVP161_1150) pilB 1245930..1247315 (-) 1386 WP_061406214.1 GspE/PulE family protein Machinery gene
  PmVP161_RS05730 (PmVP161_1151) pilA 1247315..1247749 (-) 435 WP_061406215.1 prepilin peptidase-dependent pilin Machinery gene
  PmVP161_RS05735 (PmVP161_1152) ampD 1247909..1248475 (+) 567 WP_005719130.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PmVP161_RS05740 (PmVP161_1153) rppH 1249061..1249657 (+) 597 WP_005722417.1 RNA pyrophosphohydrolase -
  PmVP161_RS05745 (PmVP161_1154) - 1249660..1250454 (+) 795 WP_005722415.1 sulfite exporter TauE/SafE family protein -
  PmVP161_RS05750 (PmVP161_1155) lgt 1250464..1251276 (+) 813 WP_010906471.1 prolipoprotein diacylglyceryl transferase -
  PmVP161_RS05755 (PmVP161_1156) - 1251273..1252124 (+) 852 WP_005722413.1 thymidylate synthase -
  PmVP161_RS05760 (PmVP161_1157) tadA 1252139..1252639 (+) 501 WP_005722410.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15213.68 Da        Isoelectric Point: 9.1215

>NTDB_id=422978 PmVP161_RS05730 WP_061406215.1 1247315..1247749(-) (pilA) [Pasteurella multocida strain VP161]
MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNTPSECSAGQHGIR
ANISSGKKYLSSINVKSGVITVIGQKSLEGVNYTLSATGNAVDGVSWSVKCNGGSEVFPAGFCA

Nucleotide


Download         Length: 435 bp        

>NTDB_id=422978 PmVP161_RS05730 WP_061406215.1 1247315..1247749(-) (pilA) [Pasteurella multocida strain VP161]
ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT
TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCTGCTC
CTTATCGTGCCGAGGTAGAACTTTGTATCTATAATACAAATACGCCCAGTGAATGTAGTGCAGGACAGCATGGTATTAGA
GCAAATATAAGTTCTGGTAAAAAATATCTCAGCTCAATCAATGTCAAGTCTGGCGTGATTACTGTCATTGGTCAAAAAAG
CTTAGAGGGAGTCAATTACACTTTAAGCGCGACAGGAAATGCCGTTGATGGTGTTTCATGGAGTGTAAAATGTAATGGTG
GTAGTGAAGTTTTCCCAGCAGGATTTTGCGCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9LA12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

59.028

100

0.59
  pilA Haemophilus influenzae Rd KW20

59.028

100

0.59
  pilA Glaesserella parasuis strain SC1401

53.02

100

0.549
  comP Acinetobacter baylyi ADP1

37.681

95.833

0.361

Multiple sequence alignment