Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   G3T44_RS05095 Genome accession   NZ_CP048765
Coordinates   974813..975544 (+) Length   243 a.a.
NCBI ID   WP_052801667.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB023     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 969813..980544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T44_RS05065 (G3T44_05055) rpsF 969956..970333 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  G3T44_RS05070 (G3T44_05060) ssb 970342..970893 (+) 552 WP_087691968.1 single-stranded DNA-binding protein -
  G3T44_RS05075 (G3T44_05065) rpsR 970904..971164 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  G3T44_RS05080 (G3T44_05070) lon 971224..973599 (-) 2376 WP_002853487.1 endopeptidase La -
  G3T44_RS05085 (G3T44_05075) - 973616..974263 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  G3T44_RS05090 (G3T44_05080) fliW 974424..974813 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  G3T44_RS05095 (G3T44_05085) proC 974813..975544 (+) 732 WP_052801667.1 pyrroline-5-carboxylate reductase Machinery gene
  G3T44_RS05100 (G3T44_05090) ctsT 975541..975843 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene
  G3T44_RS05105 (G3T44_05095) - 975840..976502 (+) 663 WP_052817074.1 hypothetical protein -
  G3T44_RS05110 (G3T44_05100) - 976499..976951 (+) 453 WP_052817076.1 hypothetical protein -
  G3T44_RS05115 (G3T44_05105) hemD 976948..977577 (-) 630 WP_002936697.1 uroporphyrinogen-III synthase -
  G3T44_RS05120 (G3T44_05110) thiE 977555..978187 (-) 633 WP_167844424.1 thiamine phosphate synthase -
  G3T44_RS05125 (G3T44_05115) thiD 978177..978989 (-) 813 WP_052781897.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  G3T44_RS05130 (G3T44_05120) - 978986..979672 (-) 687 WP_167861720.1 endonuclease III domain-containing protein -
  G3T44_RS05135 (G3T44_05125) - 979669..980430 (-) 762 WP_002867190.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26612.06 Da        Isoelectric Point: 8.9106

>NTDB_id=422779 G3T44_RS05095 WP_052801667.1 974813..975544(+) (proC) [Campylobacter jejuni strain ZJB023]
MLYILANGAMATALAYGLKDSYEICIVGRSLEKLQTLAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIMPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEMQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
STK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=422779 G3T44_RS05095 WP_052801667.1 974813..975544(+) (proC) [Campylobacter jejuni strain ZJB023]
ATGCTCTATATACTTGCAAATGGAGCTATGGCAACAGCCTTAGCCTATGGATTAAAAGATAGTTATGAAATTTGCATAGT
AGGAAGAAGCTTAGAAAAGCTTCAAACTCTTGCCAAGGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAGG
GCAAAGATGTTATTTTAGCATTTAAACCCTATGCTTTAGAAAATATTGCCCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATGCCTAATAC
AGCAGCTAAATATAAGGCTTCAACTACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGTTCAGCTTATAAATTAGACAATGAAATGCAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGTATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTTAATCTTAC
ACGCTCTTTATTTAAAAGCTCTAGCGCTTTGCTAGAACATGAACATCCAGCCATTATTAAAGAAAATATTTGCTCTCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCACTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

97.531

100

0.975


Multiple sequence alignment