Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   G3T45_RS02445 Genome accession   NZ_CP048764
Coordinates   456217..456837 (-) Length   206 a.a.
NCBI ID   WP_167843380.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZH003     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 445320..474654 456217..456837 within 0


Gene organization within MGE regions


Location: 445320..474654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T45_RS02350 (G3T45_02350) - 445320..446522 (+) 1203 WP_032593176.1 site-specific integrase -
  G3T45_RS02355 (G3T45_02355) - 446519..446689 (-) 171 WP_002864902.1 helix-turn-helix domain-containing protein -
  G3T45_RS02360 (G3T45_02360) - 446682..447224 (-) 543 WP_032593178.1 pentapeptide repeat-containing protein -
  G3T45_RS02365 (G3T45_02365) - 447416..448102 (-) 687 WP_032593184.1 hypothetical protein -
  G3T45_RS02370 (G3T45_02370) - 448105..448524 (-) 420 WP_032593187.1 YopX family protein -
  G3T45_RS02375 (G3T45_02375) - 448527..449237 (-) 711 WP_167843377.1 Rha family transcriptional regulator -
  G3T45_RS08785 - 449368..449775 (-) 408 WP_052783277.1 toxin-antitoxin system HicB family antitoxin -
  G3T45_RS02385 (G3T45_02385) - 449819..450571 (-) 753 WP_070286490.1 site-specific DNA-methyltransferase -
  G3T45_RS02390 (G3T45_02390) - 450552..450992 (-) 441 WP_038402054.1 DUF3310 domain-containing protein -
  G3T45_RS02400 (G3T45_02400) - 451235..451498 (-) 264 WP_167843447.1 hypothetical protein -
  G3T45_RS02405 (G3T45_02405) - 451479..452174 (-) 696 WP_002783960.1 hypothetical protein -
  G3T45_RS02410 (G3T45_02410) - 452174..452908 (-) 735 WP_032582841.1 hypothetical protein -
  G3T45_RS02415 (G3T45_02415) - 452910..453764 (-) 855 WP_002874354.1 lambda-exonuclease family protein -
  G3T45_RS02420 (G3T45_02420) - 453766..453993 (-) 228 WP_002874355.1 helix-turn-helix domain-containing protein -
  G3T45_RS02425 (G3T45_02425) - 453984..454241 (-) 258 WP_167843379.1 hypothetical protein -
  G3T45_RS02430 (G3T45_02430) - 454232..454501 (-) 270 WP_002874357.1 hypothetical protein -
  G3T45_RS02435 (G3T45_02435) - 455063..455335 (-) 273 WP_002783985.1 hypothetical protein -
  G3T45_RS08790 - 455491..456183 (+) 693 WP_223206741.1 hypothetical protein -
  G3T45_RS02445 (G3T45_02445) CJE1441 456217..456837 (-) 621 WP_167843380.1 DNA/RNA non-specific endonuclease Regulator
  G3T45_RS02450 (G3T45_02450) - 456843..457556 (-) 714 WP_041176817.1 hypothetical protein -
  G3T45_RS02455 (G3T45_02455) - 457543..458331 (-) 789 WP_011049706.1 HipA family kinase -
  G3T45_RS02460 (G3T45_02460) - 458328..459062 (-) 735 WP_044261616.1 S24 family peptidase -
  G3T45_RS02465 (G3T45_02465) - 459174..459392 (+) 219 WP_002826741.1 hypothetical protein -
  G3T45_RS02470 (G3T45_02470) - 459389..459823 (+) 435 WP_002826742.1 hypothetical protein -
  G3T45_RS02475 (G3T45_02475) - 459820..460197 (+) 378 WP_052847754.1 hypothetical protein -
  G3T45_RS02480 (G3T45_02480) - 460194..461195 (+) 1002 WP_167843381.1 hypothetical protein -
  G3T45_RS02485 (G3T45_02485) - 461206..461853 (+) 648 WP_167843382.1 hypothetical protein -
  G3T45_RS02490 (G3T45_02490) - 461871..462251 (+) 381 WP_048818583.1 crossover junction endodeoxyribonuclease RusA -
  G3T45_RS02495 (G3T45_02495) - 462251..462637 (+) 387 WP_002826748.1 terminase small subunit -
  G3T45_RS02500 (G3T45_02500) - 462634..463926 (+) 1293 WP_002875069.1 terminase -
  G3T45_RS02505 (G3T45_02505) - 463916..464188 (+) 273 WP_002875070.1 hypothetical protein -
  G3T45_RS02510 (G3T45_02510) - 464169..465707 (+) 1539 WP_002875071.1 hypothetical protein -
  G3T45_RS02515 (G3T45_02515) - 465700..465903 (+) 204 WP_000931940.1 hypothetical protein -
  G3T45_RS02520 (G3T45_02520) - 465893..466540 (+) 648 WP_002875073.1 hypothetical protein -
  G3T45_RS02525 (G3T45_02525) - 466551..466931 (+) 381 WP_002791792.1 hypothetical protein -
  G3T45_RS02530 (G3T45_02530) - 467195..468409 (+) 1215 WP_167843383.1 hypothetical protein -
  G3T45_RS02535 (G3T45_02535) - 468406..472107 (+) 3702 WP_167843384.1 PBECR2 nuclease fold domain-containing protein -
  G3T45_RS02540 (G3T45_02540) - 472329..472796 (-) 468 WP_022552245.1 hypothetical protein -
  G3T45_RS02545 (G3T45_02545) - 472882..473529 (+) 648 WP_022552246.1 hypothetical protein -
  G3T45_RS02550 (G3T45_02550) - 473620..474654 (+) 1035 WP_052773615.1 DUF5309 family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24152.55 Da        Isoelectric Point: 9.7402

>NTDB_id=422748 G3T45_RS02445 WP_167843380.1 456217..456837(-) (CJE1441) [Campylobacter jejuni strain ZH003]
MKKLIILSLLTTLALADYTQYKPSEDFAKYFTKQNCSQVLDKFYYLNCYDYNYKGTKAVAYKLEAENLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPINISDTEIIDFEINNNLILKNIAIKNKISGKIDLYNF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=422748 G3T45_RS02445 WP_167843380.1 456217..456837(-) (CJE1441) [Campylobacter jejuni strain ZH003]
ATGAAAAAACTCATAATCTTATCATTATTAACAACTCTAGCATTAGCTGATTATACACAATACAAACCAAGTGAAGATTT
TGCTAAGTATTTTACTAAGCAAAACTGCTCACAAGTTTTAGATAAGTTTTATTATCTAAATTGTTATGATTATAATTATA
AAGGCACTAAAGCTGTAGCTTATAAATTAGAAGCGGAAAATCTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCATACTAT
TTCTAATGCTTCAATGAGAAAAACAACCCAAGCTCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AGATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTATTAATATTAGTGATACAGAAATTATAGACTTTGAAATTAATAATAATTTGAT
ATTAAAAAATATAGCTATTAAAAATAAAATATCAGGCAAAATAGATTTATATAATTTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

92.442

83.495

0.772
  CJE0566 Campylobacter jejuni RM1221

90.698

83.495

0.757

Multiple sequence alignment