Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LGMK_RS06810 Genome accession   NC_015734
Coordinates   1368999..1370786 (-) Length   595 a.a.
NCBI ID   WP_013103226.1    Uniprot ID   -
Organism   Leuconostoc sp. C2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1363999..1375786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGMK_RS06780 (LGMK_06660) - 1364110..1364493 (-) 384 WP_013103232.1 VOC family protein -
  LGMK_RS06785 (LGMK_06665) - 1364559..1365293 (-) 735 WP_013103231.1 sugar specific permease () -
  LGMK_RS06790 (LGMK_06670) - 1365298..1366314 (-) 1017 WP_013103230.1 zinc-dependent alcohol dehydrogenase family protein -
  LGMK_RS06795 (LGMK_06675) - 1366507..1367481 (+) 975 WP_013103229.1 LacI family DNA-binding transcriptional regulator -
  LGMK_RS06800 (LGMK_06680) - 1367533..1368453 (-) 921 WP_013103228.1 phosphoglycerate dehydrogenase -
  LGMK_RS06805 (LGMK_06685) - 1368474..1368875 (-) 402 WP_187286370.1 cytidine deaminase -
  LGMK_RS06810 (LGMK_06690) pepF 1368999..1370786 (-) 1788 WP_013103226.1 oligoendopeptidase F Regulator
  LGMK_RS06815 (LGMK_06695) - 1370871..1371899 (-) 1029 WP_013975225.1 competence protein CoiA -
  LGMK_RS06820 (LGMK_06700) - 1371948..1373381 (-) 1434 WP_013103224.1 ABC transporter substrate-binding protein/permease -
  LGMK_RS06825 (LGMK_06705) - 1373490..1374242 (-) 753 WP_013103223.1 amino acid ABC transporter ATP-binding protein -
  LGMK_RS06830 (LGMK_06710) - 1374239..1375687 (-) 1449 WP_013975226.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67952.52 Da        Isoelectric Point: 4.4521

>NTDB_id=41699 LGMK_RS06810 WP_013103226.1 1368999..1370786(-) (pepF) [Leuconostoc sp. C2]
MAQLLRNEVPEKLTWDLSTIFASDEQWETAFSEIQQDLKGLKQFEGHVGDSATTLQNALEADLKLERQLEKVYVYAHQIY
DQDTTNQTYAAFNTRVQGLWAEVSEATAYFQPEVLNIPDDSLTRFLKTPELQPYTHLFETLQAQKPHTLPADQEGLLAGV
SDILGASENTFGVLDNSDITFADVHTEDGEIVPLTNGLYSLLLESQSRDLRREAFETLYDSYIRLQNTFASTLSSHVKGH
NFLAKVRHYDSAREAAILPHSLPTSVFDTLRQTVDENLPLLHRFVALRRKVLGVEDVHSYDLYVPLVDEVEFDVTYDRAQ
EIVLAALAPLGQDYLEIVQKAFDERWIDVVENKGKRSGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYMTRH
QQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNDDSKFQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHEQSAAGEALTAD
KMSAYYAALNQRYYGPDLFPDEEIAYEWTRIPHFYYNYYVYQYATGEAAATTLAERIINHDGAEAYKTYLKAGSSDYPLN
VISRAGVDMNQAGYLKQAFSVFESRLDQLENLLIK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=41699 LGMK_RS06810 WP_013103226.1 1368999..1370786(-) (pepF) [Leuconostoc sp. C2]
ATGGCACAACTACTACGTAATGAAGTACCTGAAAAGTTAACATGGGATTTAAGTACTATTTTTGCATCTGATGAACAATG
GGAAACCGCTTTTAGTGAAATACAACAAGATTTAAAAGGATTAAAACAATTTGAGGGCCATGTTGGCGATTCTGCAACGA
CCCTCCAAAATGCGCTAGAAGCCGATCTTAAGTTAGAGCGTCAATTAGAAAAAGTTTATGTTTATGCACATCAAATTTAT
GACCAGGATACGACTAATCAAACGTATGCGGCTTTTAATACTAGGGTACAGGGTCTTTGGGCGGAAGTTAGCGAAGCAAC
AGCCTATTTTCAGCCGGAAGTCTTAAATATACCAGATGATAGTTTGACACGTTTTTTAAAAACACCTGAATTGCAACCTT
ATACACATTTGTTTGAGACACTACAAGCGCAAAAACCACATACATTGCCTGCCGATCAAGAAGGGTTGCTAGCAGGCGTG
AGTGACATTCTTGGTGCATCAGAAAATACATTTGGTGTGTTAGATAATTCTGATATAACATTTGCTGATGTGCATACAGA
AGATGGCGAAATAGTCCCCTTGACCAATGGGTTGTATAGCTTATTACTTGAATCTCAATCACGTGATCTGCGTCGTGAAG
CCTTTGAAACTTTGTATGATAGTTACATTAGGCTACAAAATACGTTTGCATCAACCTTGTCGTCACACGTTAAAGGACAT
AATTTTTTAGCGAAAGTGCGTCACTATGATTCTGCGCGTGAAGCAGCTATTTTACCACACAGTTTACCAACATCCGTTTT
TGACACATTAAGACAAACAGTAGATGAAAATCTACCATTATTACATCGATTTGTTGCCCTACGTCGAAAGGTATTAGGCG
TGGAAGATGTTCACTCTTATGATCTCTATGTGCCATTAGTCGATGAAGTTGAATTTGATGTGACGTATGATCGTGCGCAA
GAAATTGTGTTGGCTGCGTTAGCACCTTTGGGTCAAGATTATCTTGAGATTGTCCAAAAAGCCTTTGATGAGCGTTGGAT
TGACGTGGTAGAAAATAAAGGGAAGCGCTCAGGTGCCTATTCAAGTGGTACTTATGATACCAATCCGTTTATTTTGTTAA
ATTGGCAAAATAATTTAAATAATGTTTACACGTTAGCCCATGAAATGGGTCATTCTGTGCATTCATATATGACACGTCAT
CAACAGCCTTATCACTACGGTGATTATCCAATTTTTCTTGCAGAAATTGCCTCAACAACGAATGAAAGTTTATTAACTGA
TTACTTGCTGAAAACAAATGATGATTCCAAGTTTCAAGCCTATGTTTTGAATCAGTATCTTGATGGATTTAAGGGAACAG
TATTTCGTCAAACCCAATTTGCAGAATTTGAAGATTGGATTCACGAGCAAAGCGCTGCAGGGGAGGCACTAACTGCTGAT
AAAATGAGCGCTTACTACGCGGCTTTGAATCAAAGGTACTATGGTCCAGACTTGTTCCCAGATGAAGAAATAGCCTATGA
ATGGACACGTATACCTCATTTTTACTACAACTATTATGTTTATCAGTATGCAACTGGGGAAGCGGCAGCGACAACACTGG
CCGAACGTATTATTAATCATGACGGCGCAGAAGCCTACAAAACTTATTTGAAAGCAGGGTCTTCTGATTATCCACTAAAT
GTTATTTCACGAGCTGGTGTTGACATGAATCAAGCTGGCTATTTAAAACAGGCCTTTAGTGTTTTTGAATCGCGTCTTGA
TCAATTAGAAAATTTATTAATTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-579)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.288

99.664

0.531

Multiple sequence alignment