Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   GQY29_RS08365 Genome accession   NZ_CP047191
Coordinates   1583296..1583454 (-) Length   52 a.a.
NCBI ID   WP_014608276.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EU01     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1578296..1588454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQY29_RS08330 (GQY29_08330) cas1 1578458..1579462 (-) 1005 WP_023909625.1 CRISPR-associated endonuclease Cas1 -
  GQY29_RS08335 (GQY29_08335) - 1579601..1580548 (-) 948 WP_023909624.1 dihydroorotate dehydrogenase -
  GQY29_RS08340 (GQY29_08340) - 1580567..1581340 (-) 774 WP_011681108.1 dihydroorotate dehydrogenase electron transfer subunit -
  GQY29_RS08345 (GQY29_08345) - 1581339..1581554 (+) 216 WP_011681107.1 hypothetical protein -
  GQY29_RS08350 (GQY29_08350) - 1581611..1582159 (-) 549 WP_014608278.1 DJ-1 family glyoxalase III -
  GQY29_RS08360 (GQY29_08360) - 1582426..1583094 (-) 669 WP_014621543.1 TraX family protein -
  GQY29_RS08365 (GQY29_08365) prx 1583296..1583454 (-) 159 WP_014608276.1 hypothetical protein Regulator
  GQY29_RS08370 (GQY29_08370) - 1583951..1584142 (-) 192 WP_011681104.1 hypothetical protein -
  GQY29_RS08375 (GQY29_08375) - 1584146..1584631 (-) 486 WP_014607832.1 NUDIX domain-containing protein -
  GQY29_RS08380 (GQY29_08380) - 1584937..1585893 (-) 957 WP_014727508.1 hypothetical protein -
  GQY29_RS08385 (GQY29_08385) - 1586216..1587874 (+) 1659 WP_011681101.1 NFACT RNA binding domain-containing protein -

Sequence

Protein


Download         Length: 52 a.a.        Molecular weight: 5835.59 Da        Isoelectric Point: 4.6646

>NTDB_id=411413 GQY29_RS08365 WP_014608276.1 1583296..1583454(-) (prx) [Streptococcus thermophilus strain EU01]
MDNGFIKGDTVQIVRKNGKIHDYVLDGERVEPHEILSLEKVSDIIKELGGDN

Nucleotide


Download         Length: 159 bp        

>NTDB_id=411413 GQY29_RS08365 WP_014608276.1 1583296..1583454(-) (prx) [Streptococcus thermophilus strain EU01]
ATGGACAACGGTTTTATTAAAGGTGATACTGTCCAGATTGTCCGAAAGAATGGTAAGATCCATGACTACGTTTTAGACGG
TGAACGAGTTGAGCCACACGAAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAAGAACTAGGCGGAGACAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

54.167

92.308

0.5
  prx Streptococcus pyogenes MGAS8232

53.061

94.231

0.5
  prx Streptococcus pyogenes MGAS315

51.02

94.231

0.481
  prx Streptococcus pyogenes MGAS315

50

92.308

0.462
  prx Streptococcus pyogenes MGAS315

71.875

61.538

0.442
  prx Streptococcus pyogenes MGAS315

61.765

65.385

0.404
  prx Streptococcus pyogenes MGAS315

70

57.692

0.404

Multiple sequence alignment