Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   GQO96_RS17550 Genome accession   NZ_CP046898
Coordinates   3634172..3634498 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain A1429     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3629172..3639498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQO96_RS17530 (GQO96_17445) - 3629273..3629902 (-) 630 WP_000219967.1 FHA domain-containing protein -
  GQO96_RS17535 (GQO96_17450) gspD 3629943..3632219 (-) 2277 WP_024432837.1 type II secretion system secretin GspD -
  GQO96_RS17540 (GQO96_17455) - 3632261..3633097 (-) 837 WP_000870031.1 type II secretion system protein N -
  GQO96_RS17545 (GQO96_17460) gspN 3633097..3633840 (-) 744 WP_000730343.1 type II secretion system protein N -
  GQO96_RS17550 (GQO96_17465) hns 3634172..3634498 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  GQO96_RS17555 (GQO96_17470) - 3634693..3635133 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  GQO96_RS17560 (GQO96_17475) - 3635141..3636334 (-) 1194 WP_000681780.1 membrane protein -
  GQO96_RS17565 (GQO96_17480) - 3636344..3637183 (-) 840 WP_032030849.1 hypothetical protein -
  GQO96_RS17570 (GQO96_17485) - 3637192..3637959 (-) 768 WP_032030850.1 uroporphyrinogen-III synthase -
  GQO96_RS17575 (GQO96_17490) hemC 3637964..3638881 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=409201 GQO96_RS17550 WP_000801427.1 3634172..3634498(-) (hns) [Acinetobacter baumannii strain A1429]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=409201 GQO96_RS17550 WP_000801427.1 3634172..3634498(-) (hns) [Acinetobacter baumannii strain A1429]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment