Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPY11_RS00565 Genome accession   NZ_CP046850
Coordinates   107353..108552 (-) Length   399 a.a.
NCBI ID   WP_154124830.1    Uniprot ID   -
Organism   Grimontia hollisae strain F9489     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 102353..113552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY11_RS00545 - 103583..103735 (+) 153 WP_154124828.1 hypothetical protein -
  GPY11_RS00550 - 104044..104502 (-) 459 WP_114995716.1 NADAR family protein -
  GPY11_RS00555 - 104648..104770 (+) 123 WP_005504995.1 UxaA family hydrolase -
  GPY11_RS00560 - 105210..107267 (+) 2058 WP_154124829.1 hybrid sensor histidine kinase/response regulator -
  GPY11_RS00565 cqsA 107353..108552 (-) 1200 WP_154124830.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY11_RS00570 - 108968..109597 (-) 630 WP_040528898.1 class II aldolase/adducin family protein -
  GPY11_RS00575 - 110173..110706 (-) 534 WP_154124831.1 NUDIX domain-containing protein -
  GPY11_RS00580 yeiP 110882..111457 (+) 576 WP_005504987.1 elongation factor P-like protein YeiP -
  GPY11_RS00585 yegS 111607..112497 (+) 891 WP_005504985.1 lipid kinase YegS -
  GPY11_RS00590 trxC 112699..113127 (+) 429 WP_115660329.1 thioredoxin TrxC -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 44027.19 Da        Isoelectric Point: 5.2769

>NTDB_id=408893 GPY11_RS00565 WP_154124830.1 107353..108552(-) (cqsA) [Grimontia hollisae strain F9489]
METPSTPSTSIYKKKLPSFVEARLNSFLRDMTEPYENRRPLPVSSRPGEGAVIMQSNDYLALSFDDDIQTAHLNAIKTTN
ENVVMSAVFLQDAEHKPEFEKRLAEFIGMDGCVLSQSGWTANVGLLQTICEPGTHVYIDFFAHMSLWEGARIAGAQVIPF
MHNSVSNLKRQIKKHGPGIILVDSVYSTIGTVAPLPAICELAKELDCALVVDESHSLGTHGPGGSGLINEMEVRDQVDFV
TTSLAKAFAYRAGAVLGPDNLIIALPFVSFPAIFSSTVLPQEVARLEATLDVIQKSDDKRRRLFEISDVLRAGLKEIGFN
IRSESQIISLECGDEQNTEHVRDFLESKGVFGAVFCSPATPKNKAIIRFSLNADMSYREVDHVLTVCQAAYNHPDLRFY

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=408893 GPY11_RS00565 WP_154124830.1 107353..108552(-) (cqsA) [Grimontia hollisae strain F9489]
ATGGAAACCCCATCTACTCCATCTACATCTATATATAAAAAAAAACTCCCTTCTTTTGTCGAGGCTCGTCTGAATTCGTT
TCTGCGCGATATGACAGAGCCTTATGAAAACCGACGGCCACTGCCTGTTAGCAGCCGACCCGGAGAGGGAGCCGTAATCA
TGCAGAGTAATGATTACCTCGCGCTTAGCTTTGATGACGATATTCAAACTGCACATTTGAATGCAATTAAAACGACGAAT
GAAAACGTCGTGATGTCAGCGGTATTCTTACAAGATGCTGAGCATAAGCCGGAGTTTGAAAAGCGCCTGGCTGAATTTAT
CGGCATGGATGGGTGTGTATTATCTCAATCTGGCTGGACGGCGAATGTCGGCTTGCTACAAACCATTTGTGAGCCCGGTA
CTCACGTCTATATTGATTTCTTTGCCCATATGTCATTGTGGGAAGGCGCTCGGATAGCAGGAGCTCAAGTTATCCCTTTC
ATGCACAACAGCGTTTCTAATCTCAAGCGACAAATAAAAAAACATGGTCCCGGCATCATTTTGGTGGATTCGGTTTACAG
CACCATCGGTACTGTTGCACCGCTCCCGGCGATCTGTGAATTGGCCAAAGAACTGGATTGTGCGCTGGTGGTTGATGAAT
CACATTCTTTGGGCACTCATGGTCCTGGCGGTTCGGGTCTGATTAACGAAATGGAGGTACGGGACCAGGTAGATTTTGTT
ACTACCAGCCTTGCTAAGGCATTTGCTTACCGGGCTGGGGCGGTATTGGGTCCGGACAATTTGATCATTGCATTACCGTT
TGTGTCTTTTCCGGCAATTTTCAGTTCTACTGTTTTGCCTCAGGAAGTTGCCCGGCTTGAGGCAACCCTTGATGTGATCC
AAAAAAGTGATGACAAGCGAAGGCGGCTTTTTGAAATATCTGATGTCTTGCGTGCGGGGTTGAAGGAGATTGGTTTTAAT
ATTCGCAGTGAATCCCAAATCATCTCCCTAGAGTGCGGTGATGAGCAGAATACGGAACATGTCCGGGACTTTCTGGAAAG
CAAGGGGGTGTTTGGGGCGGTATTTTGTTCACCGGCAACACCGAAGAACAAGGCCATTATCCGTTTCTCATTGAATGCAG
ATATGAGCTACCGGGAAGTGGATCATGTGCTGACTGTTTGTCAGGCAGCATACAACCACCCAGATCTTCGTTTCTATTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(74-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

52.85

96.742

0.511

Multiple sequence alignment