Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GPY04_RS07535 Genome accession   NZ_CP046844
Coordinates   1671885..1672196 (-) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae C6706     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1666885..1677196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY04_RS07510 lapB 1667079..1668248 (-) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -
  GPY04_RS07515 - 1668260..1668541 (-) 282 WP_000691492.1 LapA family protein -
  GPY04_RS07520 ihfB 1668680..1668958 (-) 279 WP_000167341.1 integration host factor subunit beta -
  GPY04_RS07525 rpsA 1669246..1670916 (-) 1671 WP_000140318.1 30S ribosomal protein S1 -
  GPY04_RS07530 cmk 1671025..1671702 (-) 678 WP_000094752.1 (d)CMP kinase -
  GPY04_RS07535 comEA 1671885..1672196 (-) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  GPY04_RS07540 ppiD 1672331..1674190 (-) 1860 WP_000969331.1 peptidylprolyl isomerase -
  GPY04_RS07545 - 1674343..1674615 (-) 273 WP_001044516.1 HU family DNA-binding protein -
  GPY04_RS07550 lon 1674799..1677159 (-) 2361 WP_001047611.1 endopeptidase La -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=408773 GPY04_RS07535 WP_001166105.1 1671885..1672196(-) (comEA) [Vibrio cholerae C6706]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=408773 GPY04_RS07535 WP_001166105.1 1671885..1672196(-) (comEA) [Vibrio cholerae C6706]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437

Multiple sequence alignment