Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY16_RS14540 Genome accession   NZ_CP046832
Coordinates   3121818..3122528 (+) Length   236 a.a.
NCBI ID   WP_170937808.1    Uniprot ID   A0AAW4HB64
Organism   Vibrio vulnificus strain 06-2410     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3116818..3127528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY16_RS14520 greB 3117096..3117578 (-) 483 WP_011078926.1 transcription elongation factor GreB -
  GPY16_RS14525 - 3117814..3120138 (+) 2325 WP_130270724.1 Tex family protein -
  GPY16_RS14530 - 3120354..3120824 (-) 471 WP_011078928.1 hypothetical protein -
  GPY16_RS14535 bioH 3120962..3121729 (-) 768 WP_158105533.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY16_RS14540 comF 3121818..3122528 (+) 711 WP_170937808.1 ComF family protein Machinery gene
  GPY16_RS14545 nfuA 3122659..3123243 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  GPY16_RS14550 nudE 3123359..3123913 (+) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  GPY16_RS14555 cysQ 3123928..3124755 (+) 828 WP_017420493.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY16_RS14560 - 3124873..3125634 (-) 762 WP_158105534.1 type II secretion system protein N -
  GPY16_RS14565 - 3125636..3126127 (-) 492 WP_158105535.1 type II secretion system protein M -
  GPY16_RS14570 gspL 3126135..3127334 (-) 1200 WP_158105536.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27261.98 Da        Isoelectric Point: 9.4881

>NTDB_id=408609 GPY16_RS14540 WP_170937808.1 3121818..3122528(+) (comF) [Vibrio vulnificus strain 06-2410]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWQRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGCTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=408609 GPY16_RS14540 WP_170937808.1 3121818..3122528(+) (comF) [Vibrio vulnificus strain 06-2410]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAATGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCACCTTTACT
CATCCAACGCATTGACCACCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCAGCGAGGCTTCA
ACCAAAGCGATGTATTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCATTCCTTGCTCACGCTTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAATTTAGCTGGTGCTTTTCGCCTCAATCGCTCGGC
TTTACCTCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCTGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.25

100

0.47

Multiple sequence alignment