Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GMO17_RS21865 Genome accession   NZ_CP046441
Coordinates   4840295..4841887 (+) Length   530 a.a.
NCBI ID   WP_024669785.1    Uniprot ID   A0AA40TU09
Organism   Pseudomonas coronafaciens pv. coronafaciens strain B19001     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4835295..4846887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMO17_RS21845 (GMO17_22180) pgeF 4837068..4837796 (-) 729 WP_191867871.1 peptidoglycan editing factor PgeF -
  GMO17_RS21850 (GMO17_22185) rluD 4837793..4838755 (-) 963 WP_005895286.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GMO17_RS21855 (GMO17_22190) - 4838905..4839927 (+) 1023 WP_005895284.1 outer membrane protein assembly factor BamD -
  GMO17_RS21860 (GMO17_22195) - 4840066..4840305 (+) 240 WP_054997897.1 PP0621 family protein -
  GMO17_RS21865 (GMO17_22200) pilS 4840295..4841887 (+) 1593 WP_024669785.1 two-component system sensor histidine kinase NtrB Regulator
  GMO17_RS21870 (GMO17_22205) pilR 4841890..4843230 (+) 1341 WP_122347869.1 sigma-54-dependent transcriptional regulator Regulator
  GMO17_RS21875 (GMO17_22210) - 4843392..4844009 (+) 618 WP_122347870.1 TetR/AcrR family transcriptional regulator -
  GMO17_RS21880 (GMO17_22215) - 4844091..4845206 (+) 1116 WP_122323612.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58404.47 Da        Isoelectric Point: 7.1349

>NTDB_id=404300 GMO17_RS21865 WP_024669785.1 4840295..4841887(+) (pilS) [Pseudomonas coronafaciens pv. coronafaciens strain B19001]
MTADTPYLASPQAQRILRLYHLYRLTIGVVLVLLISTSMETELLQLANPNLFRAGCWLYLVFNILVVVLLERPTRQAQLF
SLAMTDAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAISAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEGLAEQRAADVDSLEELNALILQRMRTGILVLDARRQVLLANQGALTLLGHERLVGQVID
AYSPQLVDRLRQWLINPIMVPRSISVSAIGPELQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSTPDRRLAQIIHDQSQRIDRVIENVLQLSRRREAKPDLLDLSVWLERFVSDLRASVPPD
QTIHVETGPGVLTTRMDAEQLTQVMTNLVQNGLRYSRQNHAYAQVWLRLHHDPKSALPVLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNRAHLEYVSRQSGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=404300 GMO17_RS21865 WP_024669785.1 4840295..4841887(+) (pilS) [Pseudomonas coronafaciens pv. coronafaciens strain B19001]
GTGACCGCTGATACGCCTTACCTTGCCAGCCCACAGGCGCAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
CGGCGTCGTCCTGGTGTTGCTCATTTCCACAAGCATGGAGACCGAGCTTCTACAGTTGGCAAACCCGAACCTGTTCCGGG
CAGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTGGTGCTACTGGAACGCCCTACGCGCCAGGCTCAGCTGTTC
AGCCTGGCCATGACCGACGCAATCATGCTCTCAGGCCTGTTCTATGCGGCGGGCGGCCCTTCCAGTGGTATCGGCAATCT
GCTGATTGCTTCGGTGGCCATCAGCAACGTGCTGTTGCGCGGTCGCATCGGTCTGCTGATCGCTGCCATATCGGCCATCG
GCATCATTTACCTGACGTTCTATATCAGCTTCGGCACACCCTCGGTTTCCAATGATTACGTGCAAGCGGGGTCCTTGGGC
GCTTTGTGCTTTGCTGCTGCGTTGCTGGTGCAGGCGCTGACGGCACGCATGCAGGTCAGCGAGGGGCTGGCCGAACAACG
GGCCGCAGATGTCGACAGCCTTGAAGAACTCAACGCGCTCATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTGGACG
CCCGCCGCCAGGTGCTGCTGGCCAATCAGGGCGCGCTGACCCTGCTGGGCCACGAGCGGCTGGTCGGTCAGGTCATCGAC
GCTTATTCGCCGCAGCTGGTGGATCGCCTTCGGCAGTGGCTGATCAATCCGATCATGGTGCCACGCAGTATCAGCGTCTC
GGCGATCGGCCCGGAGCTGCAGCCGAGTTTTGCCGCACTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTCGAAG
ACCTGTCGCAGATTGCTCACCAGGCACAGCAGCTAAAACTGGCAGCGCTGGGCCGTCTGACTGCCGGGATTGCCCATGAA
ATCCGCAACCCCTTGGGGGCTGTCAGCCATGCGGCGCAGTTACTCAACGAATCGGAAGAGCTCAGCACGCCGGATCGCCG
CCTGGCGCAGATCATTCACGACCAGTCGCAGCGCATTGACCGGGTGATTGAAAACGTACTGCAACTGTCCCGACGACGCG
AGGCGAAACCGGACCTGCTGGACCTCAGCGTCTGGCTTGAAAGATTTGTCAGCGACCTTCGCGCCTCTGTCCCGCCCGAT
CAGACTATCCACGTGGAAACAGGTCCCGGCGTGCTGACCACCCGCATGGACGCGGAGCAATTGACTCAGGTCATGACTAA
CCTGGTGCAGAACGGCCTACGCTACAGCCGCCAAAATCATGCGTACGCGCAGGTCTGGCTGAGGCTGCACCATGATCCGA
AAAGCGCCCTGCCCGTTCTGGAAGTGCTGGATGATGGTCCGGGCGTCAGTGAGCAGCACCTGAGCAAGATTTTCGAACCG
TTTTTCACGACTGAAAGCAAAGGCACCGGCCTGGGTCTATACCTTTCCCGAGAGTTATGCGAAAGCAATCGGGCGCATTT
GGAATACGTCTCCCGACAAAGCGGTGGCAGTTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.959

100

0.621

Multiple sequence alignment