Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   GJV52_RS02935 Genome accession   NZ_CP046027
Coordinates   570276..573503 (-) Length   1075 a.a.
NCBI ID   WP_154212852.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 565276..578503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS02905 (GJV52_02905) - 565542..566000 (-) 459 WP_100562385.1 GNAT family N-acetyltransferase -
  GJV52_RS02910 (GJV52_02910) - 566079..566324 (-) 246 WP_095501972.1 Fis family transcriptional regulator -
  GJV52_RS02915 (GJV52_02915) - 566366..566992 (-) 627 WP_100562383.1 LysE family transporter -
  GJV52_RS02920 (GJV52_02920) - 567348..568490 (-) 1143 WP_095503172.1 RNA-guided endonuclease TnpB family protein -
  GJV52_RS02925 (GJV52_02925) tnpA 568535..568951 (+) 417 WP_095503171.1 IS200/IS605 family transposase -
  GJV52_RS02930 (GJV52_02930) dusB 569155..570153 (-) 999 WP_100564591.1 tRNA dihydrouridine synthase DusB -
  GJV52_RS02935 (GJV52_02935) recC 570276..573503 (-) 3228 WP_154212852.1 exodeoxyribonuclease V subunit gamma Machinery gene
  GJV52_RS02940 (GJV52_02940) - 573815..575200 (+) 1386 WP_369832060.1 PepSY-associated TM helix domain-containing protein -
  GJV52_RS02945 (GJV52_02945) - 575584..576390 (-) 807 WP_154212853.1 integrase core domain-containing protein -

Sequence

Protein


Download         Length: 1075 a.a.        Molecular weight: 121915.24 Da        Isoelectric Point: 4.7943

>NTDB_id=400306 GJV52_RS02935 WP_154212852.1 570276..573503(-) (recC) [Neisseria brasiliensis strain N.177.16]
MFYLYQSNRLESLAALFSRIQQLQPLKHALTAEEIIVQSQGMRRYLSSYLAKELGVAANLKFSLPAGLTWRLMRELIPDV
PALSPFSPEVMRWRLLALFRSKAFQTAPEFEIVRNKLQSYLRSGESADYHLAGQLADIFDQYLVYRPQWIDAWQEGKLLD
LGEDEIWQAQLWRFLDDGRQTAPHRVALWETLLANLSPQNLPERFFVFGISTMAPMYLQLLQAISEHCDVFVFALNPSEQ
HWGNVIEAAQILKSSDDVDLSQTGHPLLASLGKQGRDFFDFLSEIEMETPVYETESSGEATLLHRLQNDIQTLSLPSENE
AEKGDALLSDGSVRVVSAHSPLRELQILKDQLLHILHEHPDWQPHDIAVLTPNIEPYSPFIEAVFGRAADGTQALPYSIS
DVKLSRRQPLFYALEQVLALLESRFEVDKVLPLLDSHLVQNRFEISEEDLPLLHDTIAELNVHWGLDGKMRGAADDLFTW
QQALSRLVLGWMLPAGGDGMWQNVSAWHGDVNQLAVFSRFTAFMQTLANTAQTWQTATTVDEWIERIRQLRDGLFALGDD
DQYAAQQFEQALVKWQEEVALSGFSDGLLPQHTVIRHISRFLSSESQAGFLRGGMTFCSMVPMRSLPFKVLCLLGLNDGD
FPRNTKPTVFDLIAKHPKKGDRARRDDDRYLFLEAIISAREILYLSYVGRSIVNDAELAPSALLSELIDTIAEMTGKRSK
DLLANWVCQHPLQAFSTRYFQLQDSVKLISTRSDYAQALNEAAHRPSEKMAPFFKQPLGNEAEPPAIVTQNEFIGFWKNP
VKAWLRQTLGWREPYRDEAWESAEPFEPEQGEKIADAYLEARRQRQDFASVETKLNAESLLPTGELGSLWQQRFQAAAKQ
LDQDLLESPKVPPVAYELVFDQQTLSGSLNHVYQCGQIMFRNKKLNAPERIALLLEHVLFNAVRPSESESGQSYFVSNDE
TVVYPEIDRHTAHDILQTWLEYYNIGQHRPLPFFAKTSLAAAQAYLKKQEWEAAQSAAAGAYFGNKMNPGQGSYTEVALV
FGHDDESPLDTPLFENLIIEMLVPLLIAVSTSKEA

Nucleotide


Download         Length: 3228 bp        

>NTDB_id=400306 GJV52_RS02935 WP_154212852.1 570276..573503(-) (recC) [Neisseria brasiliensis strain N.177.16]
ATGTTTTACCTTTATCAATCCAACCGTCTCGAATCGCTCGCCGCTTTGTTTAGCCGCATTCAGCAGCTTCAGCCCTTGAA
ACACGCGTTGACGGCGGAAGAAATTATCGTGCAAAGCCAAGGCATGCGCCGTTATTTGAGCAGCTATTTGGCGAAAGAAC
TGGGCGTGGCAGCGAACCTGAAATTCAGTCTGCCGGCCGGTTTGACATGGCGCTTGATGCGCGAGCTGATTCCCGACGTG
CCTGCGCTCAGCCCGTTTTCACCCGAAGTGATGCGCTGGCGGCTGTTGGCATTGTTCCGCAGCAAAGCGTTTCAGACGGC
GCCAGAATTTGAAATTGTGCGTAACAAGCTGCAAAGCTATTTACGCAGTGGCGAATCGGCGGATTATCATTTGGCCGGAC
AATTAGCCGATATTTTCGACCAATATTTGGTGTACCGTCCGCAATGGATTGATGCATGGCAGGAAGGCAAGCTGCTGGAT
TTGGGCGAAGATGAAATCTGGCAGGCGCAATTGTGGCGTTTTCTGGACGACGGCAGACAAACCGCGCCGCACCGCGTGGC
CTTGTGGGAAACCTTGCTGGCCAATTTGTCGCCGCAAAACCTGCCCGAACGCTTTTTCGTGTTCGGCATATCCACTATGG
CGCCGATGTATTTGCAGCTTTTGCAAGCCATTTCAGAGCATTGTGATGTGTTTGTGTTCGCGCTCAATCCGAGCGAGCAG
CATTGGGGCAATGTGATTGAAGCGGCGCAAATTTTGAAAAGCAGCGATGATGTCGATTTGAGCCAAACCGGCCATCCGCT
GCTGGCTTCATTGGGCAAGCAGGGGCGTGATTTCTTTGATTTTCTGTCGGAAATCGAGATGGAAACGCCGGTGTACGAAA
CCGAAAGCAGCGGCGAAGCGACCTTGCTGCACCGTTTGCAAAACGACATTCAAACCTTATCGCTGCCGTCTGAAAACGAG
GCAGAAAAGGGCGATGCGCTGCTTTCAGACGGCTCTGTCCGCGTGGTGTCGGCACACAGCCCCTTGCGTGAGCTGCAAAT
TTTGAAAGACCAACTGCTGCACATTTTGCACGAGCATCCCGATTGGCAGCCGCACGACATCGCCGTGCTGACCCCGAATA
TCGAGCCGTATAGCCCGTTTATCGAAGCCGTGTTCGGCCGCGCGGCAGACGGCACGCAAGCCTTGCCGTATTCCATTTCC
GATGTGAAGCTCAGCCGCCGTCAGCCGCTTTTTTACGCGTTGGAACAAGTATTGGCCTTGCTGGAAAGCCGCTTTGAAGT
GGATAAAGTGCTGCCGCTGCTCGACAGCCATTTGGTGCAAAACCGCTTTGAAATCAGCGAAGAAGATTTGCCGCTGCTGC
ACGACACCATCGCCGAACTCAACGTGCATTGGGGTTTGGATGGCAAGATGCGCGGCGCGGCGGATGATTTGTTTACTTGG
CAGCAGGCTTTGTCGCGCTTGGTGCTGGGCTGGATGCTGCCCGCAGGCGGCGACGGCATGTGGCAAAACGTCAGCGCGTG
GCACGGCGATGTCAACCAATTGGCCGTGTTCAGCCGCTTCACCGCTTTTATGCAGACCTTGGCTAACACCGCGCAAACAT
GGCAAACCGCCACCACAGTCGATGAATGGATTGAACGCATACGCCAATTGCGCGACGGCTTATTTGCCTTGGGCGACGAC
GACCAATACGCCGCGCAGCAATTCGAGCAAGCCTTGGTGAAATGGCAGGAAGAAGTGGCATTATCAGGGTTTTCAGACGG
CCTGTTGCCGCAGCACACCGTTATCCGCCACATCAGCCGCTTTTTGAGCAGCGAGAGCCAAGCCGGTTTTTTGCGTGGCG
GCATGACCTTTTGCAGCATGGTGCCGATGCGCAGCCTGCCGTTTAAAGTATTGTGTTTATTGGGTTTGAATGATGGCGAT
TTTCCGCGCAACACCAAGCCGACCGTGTTCGACTTGATTGCCAAACACCCGAAAAAAGGCGACCGCGCCCGCCGTGATGA
CGACCGCTATCTGTTTCTCGAAGCCATCATCAGCGCGCGCGAGATTCTGTATTTGTCGTATGTCGGCCGCAGCATTGTCA
ACGATGCCGAGCTGGCGCCATCGGCCTTATTGAGCGAACTCATCGACACCATCGCCGAAATGACCGGAAAACGCAGCAAA
GATTTGCTGGCAAACTGGGTGTGCCAACATCCGTTGCAAGCCTTTTCCACGCGCTATTTCCAATTGCAAGATTCTGTCAA
GCTTATCAGCACACGCAGCGATTACGCCCAAGCCCTGAACGAAGCGGCACACAGGCCGTCTGAAAAAATGGCACCGTTTT
TCAAGCAACCTTTGGGCAATGAAGCCGAACCGCCTGCTATCGTCACGCAAAACGAATTTATCGGCTTTTGGAAAAATCCG
GTCAAAGCATGGCTGCGCCAAACCTTGGGCTGGCGCGAGCCCTATCGCGATGAAGCATGGGAATCGGCTGAGCCGTTCGA
GCCGGAGCAGGGCGAAAAAATTGCCGATGCGTATCTGGAAGCGCGCCGGCAGCGGCAGGATTTTGCCAGCGTTGAAACCA
AGCTCAATGCCGAGAGCCTGTTGCCTACCGGTGAACTGGGCAGCTTGTGGCAGCAGCGTTTCCAAGCCGCCGCCAAACAG
CTCGACCAAGATTTGCTCGAAAGCCCGAAAGTACCGCCGGTGGCTTACGAATTGGTATTCGATCAGCAAACCCTAAGCGG
CAGCCTGAACCATGTGTATCAATGCGGCCAAATCATGTTCCGCAACAAAAAGCTTAACGCCCCCGAGCGCATTGCCTTGC
TGCTGGAGCATGTGTTGTTCAATGCCGTGAGGCCGTCTGAAAGCGAAAGTGGCCAAAGCTATTTTGTATCGAACGACGAA
ACCGTGGTCTATCCCGAAATCGACCGCCACACCGCCCATGACATCCTGCAAACATGGCTCGAATACTACAACATCGGCCA
ACACCGCCCCTTGCCGTTTTTCGCCAAAACCAGCTTGGCTGCTGCCCAAGCCTACCTGAAAAAACAAGAATGGGAAGCCG
CACAATCCGCTGCAGCGGGTGCGTATTTCGGCAACAAAATGAACCCGGGGCAGGGTAGCTATACCGAAGTGGCTTTGGTA
TTCGGCCACGATGATGAATCGCCGCTGGATACGCCCTTGTTTGAAAATCTGATTATTGAAATGTTGGTGCCGCTGCTGAT
TGCGGTTTCAACATCGAAAGAAGCATAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(788-1004)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

67.075

98.605

0.661

Multiple sequence alignment