Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   GII78_RS15180 Genome accession   NZ_CP045824
Coordinates   2873175..2873921 (-) Length   248 a.a.
NCBI ID   WP_072692713.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B10     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2868175..2878921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS15155 (GII78_15155) mreC 2868584..2869456 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  GII78_RS15160 (GII78_15160) mreB 2869487..2870500 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  GII78_RS15165 (GII78_15165) radC 2870592..2871287 (-) 696 WP_015251546.1 DNA repair protein RadC -
  GII78_RS15170 (GII78_15170) maf 2871324..2871893 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  GII78_RS15175 (GII78_15175) spoIIB 2872046..2873041 (-) 996 WP_038427816.1 stage II sporulation protein SpoIIB -
  GII78_RS15180 (GII78_15180) comC 2873175..2873921 (-) 747 WP_072692713.1 A24 family peptidase Machinery gene
  GII78_RS15185 (GII78_15185) folC 2874063..2875355 (-) 1293 WP_038427817.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  GII78_RS15190 (GII78_15190) valS 2875415..2878057 (-) 2643 WP_029727115.1 valine--tRNA ligase -
  GII78_RS15195 (GII78_15195) - 2878505..2878696 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=398241 GII78_RS15180 WP_072692713.1 2873175..2873921(-) (comC) [Bacillus subtilis strain MB8_B10]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPATELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=398241 GII78_RS15180 WP_072692713.1 2873175..2873921(-) (comC) [Bacillus subtilis strain MB8_B10]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAACAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment