Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GFV05_RS04120 | Genome accession | NZ_CP045648 |
| Coordinates | 846739..847134 (+) | Length | 131 a.a. |
| NCBI ID | WP_001829977.1 | Uniprot ID | A0A4Q9W3V8 |
| Organism | Staphylococcus epidermidis strain IRL01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 841739..852134
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFV05_RS04095 (GFV05_04115) | - | 843158..843562 (+) | 405 | WP_001829924.1 | F0F1 ATP synthase subunit epsilon | - |
| GFV05_RS04100 (GFV05_04120) | - | 843711..843944 (+) | 234 | WP_002456242.1 | DUF1146 family protein | - |
| GFV05_RS04105 (GFV05_04125) | murA | 844054..845319 (+) | 1266 | WP_001829978.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| GFV05_RS04110 (GFV05_04130) | fabZ | 845353..845790 (+) | 438 | WP_001829953.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| GFV05_RS04115 (GFV05_04135) | - | 846108..846548 (-) | 441 | WP_001829935.1 | YwpF-like family protein | - |
| GFV05_RS04120 (GFV05_04140) | ssb | 846739..847134 (+) | 396 | WP_001829977.1 | single-stranded DNA-binding protein | Machinery gene |
| GFV05_RS04125 (GFV05_04145) | - | 847522..848181 (+) | 660 | WP_001829904.1 | transglycosylase family protein | - |
| GFV05_RS04130 (GFV05_04150) | tenA | 848466..849155 (+) | 690 | WP_001829894.1 | thiaminase II | - |
| GFV05_RS04135 (GFV05_04155) | thiD | 849148..849969 (+) | 822 | WP_001832736.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| GFV05_RS04140 (GFV05_04160) | thiM | 849962..850750 (+) | 789 | WP_001829971.1 | hydroxyethylthiazole kinase | - |
| GFV05_RS04145 (GFV05_04165) | thiE | 850756..851394 (+) | 639 | WP_154436024.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15158.08 Da Isoelectric Point: 5.2661
>NTDB_id=395865 GFV05_RS04120 WP_001829977.1 846739..847134(+) (ssb) [Staphylococcus epidermidis strain IRL01]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI
Nucleotide
Download Length: 396 bp
>NTDB_id=395865 GFV05_RS04120 WP_001829977.1 846739..847134(+) (ssb) [Staphylococcus epidermidis strain IRL01]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
73.282 |
100 |
0.733 |
| ssb | Staphylococcus aureus MW2 |
72.519 |
100 |
0.725 |