Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   F9800_RS06085 Genome accession   NZ_CP045030
Coordinates   40183..40467 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain JW-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35183..45467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9800_RS06050 (F9800_06070) tmk 35375..36001 (+) 627 WP_000677218.1 dTMP kinase -
  F9800_RS06055 (F9800_06075) holB 36037..37020 (+) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  F9800_RS06060 (F9800_06080) - 37026..37853 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  F9800_RS06065 (F9800_06085) yabA 37868..38218 (+) 351 WP_000412064.1 DNA replication initiation control protein YabA -
  F9800_RS06070 (F9800_06090) - 38301..39041 (+) 741 WP_001055358.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  F9800_RS06075 (F9800_06095) - 39028..39318 (+) 291 WP_000414353.1 GIY-YIG nuclease family protein -
  F9800_RS06080 (F9800_06100) rsmI 39287..40162 (+) 876 WP_000267816.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  F9800_RS06085 (F9800_06105) abrB 40183..40467 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  F9800_RS06090 (F9800_06110) metG 40947..42929 (+) 1983 WP_000134138.1 methionine--tRNA ligase -
  F9800_RS06095 (F9800_06115) - 43096..43863 (+) 768 WP_000895845.1 TatD family hydrolase -
  F9800_RS06100 (F9800_06120) rnmV 44079..44636 (+) 558 WP_000692840.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=391303 F9800_RS06085 WP_000843036.1 40183..40467(-) (abrB) [Bacillus thuringiensis strain JW-1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=391303 F9800_RS06085 WP_000843036.1 40183..40467(-) (abrB) [Bacillus thuringiensis strain JW-1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment