Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   FSC09_RS08090 Genome accession   NZ_CP044455
Coordinates   1686719..1687354 (-) Length   211 a.a.
NCBI ID   WP_104472233.1    Uniprot ID   -
Organism   Acinetobacter indicus strain B18     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1681719..1692354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC09_RS08060 (FSC09_08075) - 1682092..1682523 (-) 432 WP_163145853.1 SRPBCC family protein -
  FSC09_RS08065 (FSC09_08080) tadA 1682581..1683102 (-) 522 WP_127799402.1 tRNA adenosine(34) deaminase TadA -
  FSC09_RS08070 (FSC09_08085) - 1683106..1684230 (-) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  FSC09_RS08075 (FSC09_08090) ung 1684227..1684940 (-) 714 WP_163145854.1 uracil-DNA glycosylase -
  FSC09_RS08080 (FSC09_08095) - 1684982..1685578 (-) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  FSC09_RS08085 (FSC09_08100) gspK 1685726..1686673 (-) 948 WP_163145855.1 type II secretion system minor pseudopilin GspK -
  FSC09_RS08090 (FSC09_08105) xcpW 1686719..1687354 (-) 636 WP_104472233.1 type II secretion system minor pseudopilin GspJ Machinery gene
  FSC09_RS08095 (FSC09_08110) xcpV 1687351..1687695 (-) 345 WP_267313869.1 type II secretion system protein GspI Machinery gene
  FSC09_RS08100 (FSC09_08115) - 1687835..1688407 (-) 573 WP_163145857.1 type II secretion system protein -
  FSC09_RS08105 (FSC09_08120) - 1688413..1689027 (-) 615 WP_016658223.1 TetR/AcrR family transcriptional regulator -
  FSC09_RS08110 (FSC09_08125) - 1689088..1689861 (-) 774 WP_005177502.1 TatD family hydrolase -
  FSC09_RS08115 (FSC09_08130) - 1689891..1690232 (-) 342 WP_163145858.1 PilZ domain-containing protein -
  FSC09_RS08120 (FSC09_08135) - 1690244..1691227 (-) 984 WP_075166783.1 DNA polymerase III subunit delta' -
  FSC09_RS08125 (FSC09_08140) kdsB 1691236..1692000 (-) 765 WP_163145859.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24092.39 Da        Isoelectric Point: 6.4849

>NTDB_id=390124 FSC09_RS08090 WP_104472233.1 1686719..1687354(-) (xcpW) [Acinetobacter indicus strain B18]
MIKAKRGFTLVELLVAIAIFAVLSALGWKVFDYLVKVKDRNQWHEQQLEGLQGAYQQILRDSIQIVPLTANINNDIQPAL
VLQNGRFNFSKTGVTDPLQQGIAPTERIEYQYRADEQKLYRLKYANLHQSGQDQPVSSVLLGDVSQFQVSVLNPQELSNW
PDSSIDLNDDQQKRKLPKGIKINLTVQDVQYEWIFSLLNTDFLKSDNKTTS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=390124 FSC09_RS08090 WP_104472233.1 1686719..1687354(-) (xcpW) [Acinetobacter indicus strain B18]
ATGATTAAGGCTAAACGCGGATTTACCTTGGTTGAACTGCTGGTGGCCATTGCCATCTTTGCGGTGCTGTCTGCCTTGGG
TTGGAAAGTATTTGATTATCTGGTCAAGGTCAAAGACCGTAACCAGTGGCATGAACAGCAGTTAGAAGGATTGCAGGGTG
CCTATCAGCAAATTTTACGTGATAGCATTCAGATTGTGCCGCTGACGGCCAACATCAATAATGATATTCAGCCAGCTTTG
GTATTACAAAACGGCCGTTTTAATTTTAGCAAGACCGGTGTGACCGATCCTTTGCAGCAGGGCATTGCGCCCACTGAACG
GATTGAATATCAGTACCGGGCCGACGAACAAAAACTGTATCGTCTGAAATATGCCAATTTGCATCAGTCCGGGCAGGATC
AGCCGGTTTCCAGCGTGTTATTGGGCGATGTTAGCCAATTTCAGGTCAGTGTGCTGAATCCGCAGGAACTGAGTAACTGG
CCAGACAGCAGTATTGACTTAAATGATGATCAACAAAAACGTAAACTGCCAAAAGGCATTAAAATAAATTTAACCGTACA
AGATGTACAATATGAATGGATTTTTAGCCTGTTAAATACTGACTTCCTGAAATCAGACAATAAAACCACATCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(60-194)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.735

92.891

0.573

Multiple sequence alignment