Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   FWK62_RS01475 Genome accession   NZ_CP042993
Coordinates   281824..282351 (+) Length   175 a.a.
NCBI ID   WP_011608418.1    Uniprot ID   A0A9Q6P3A6
Organism   Histophilus somni strain UOC-KLM-ATR-014     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 276824..287351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK62_RS01435 (FWK62_01435) tolQ 277106..277789 (+) 684 WP_075320973.1 protein TolQ -
  FWK62_RS01440 (FWK62_01440) tolR 277857..278279 (+) 423 WP_011608414.1 colicin uptake protein TolR -
  FWK62_RS01445 (FWK62_01445) tolA 278298..279353 (+) 1056 WP_075320972.1 cell envelope integrity protein TolA -
  FWK62_RS01450 (FWK62_01450) tolB 279381..280685 (+) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  FWK62_RS01455 (FWK62_01455) pal 280695..281150 (+) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  FWK62_RS01475 (FWK62_01475) comN 281824..282351 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FWK62_RS01480 (FWK62_01480) - 282400..283077 (+) 678 WP_011608419.1 type II secretion system protein J -
  FWK62_RS01485 (FWK62_01485) - 283080..283760 (+) 681 WP_132995094.1 DUF2572 family protein -
  FWK62_RS01490 (FWK62_01490) - 283741..284058 (+) 318 WP_012340547.1 DUF5374 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 20468.96 Da        Isoelectric Point: 9.6079

>NTDB_id=380004 FWK62_RS01475 WP_011608418.1 281824..282351(+) (comN) [Histophilus somni strain UOC-KLM-ATR-014]
MKALKGFTLLEILIVLLIISMTVTFSFPMWQTANTKMILEKEQNKLYIFIRELQARVENSNDIWFLIANRDLVSKRWCLV
AQPKNTDICDCLNPRSCNRNIPMKFYYPYFADKTMLISKVYYPREMTRLNGTRNTSTTTCFVLQSDQQRTVFSFFNVGSL
KLKGYQSLSACVNDH

Nucleotide


Download         Length: 528 bp        

>NTDB_id=380004 FWK62_RS01475 WP_011608418.1 281824..282351(+) (comN) [Histophilus somni strain UOC-KLM-ATR-014]
ATGAAAGCATTAAAGGGGTTTACTCTATTAGAAATATTGATTGTTTTACTGATTATCAGTATGACAGTAACATTTTCTTT
TCCCATGTGGCAAACAGCAAATACAAAAATGATTTTAGAAAAAGAGCAAAATAAACTCTATATTTTCATAAGGGAGCTAC
AAGCTCGAGTTGAAAATTCTAATGATATTTGGTTTTTAATTGCTAATCGTGATTTAGTGAGTAAGCGTTGGTGTCTGGTT
GCACAACCAAAAAACACAGATATATGTGATTGTTTAAATCCTCGCAGCTGTAATAGAAATATTCCGATGAAATTTTATTA
TCCTTATTTTGCAGATAAAACCATGTTAATCAGCAAAGTTTATTATCCTAGAGAAATGACTAGATTAAATGGTACAAGGA
ATACAAGTACGACGACTTGTTTTGTGTTGCAATCTGATCAGCAAAGAACAGTATTTTCGTTTTTTAATGTAGGATCTTTA
AAACTTAAAGGTTACCAATCGTTAAGTGCTTGCGTGAATGATCATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

53.293

95.429

0.509

Multiple sequence alignment