Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   HMPREF0837_RS04235 Genome accession   NC_014251
Coordinates   799351..799617 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   A0A654WS02
Organism   Streptococcus pneumoniae TCH8431/19A     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 798822..799046 799351..799617 flank 305


Gene organization within MGE regions


Location: 798822..799617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0837_RS11575 - 798822..799225 (+) 404 Protein_806 helix-turn-helix domain-containing protein -
  HMPREF0837_RS04235 (HMPREF0837_10877) HI0659 799351..799617 (+) 267 WP_001814186.1 helix-turn-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=37603 HMPREF0837_RS04235 WP_001814186.1 799351..799617(+) (HI0659) [Streptococcus pneumoniae TCH8431/19A]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=37603 HMPREF0837_RS04235 WP_001814186.1 799351..799617(+) (HI0659) [Streptococcus pneumoniae TCH8431/19A]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A654WS02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489

Multiple sequence alignment