Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   FOV14_RS14695 Genome accession   NZ_CP041784
Coordinates   3018178..3018822 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain IM1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3013178..3023822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOV14_RS14660 (FOV14_14785) - 3014363..3014794 (+) 432 WP_044052951.1 Na(+)/H(+) antiporter subunit B -
  FOV14_RS14665 (FOV14_14790) - 3014794..3015135 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  FOV14_RS14670 (FOV14_14795) - 3015128..3016609 (+) 1482 WP_014305717.1 Na+/H+ antiporter subunit D -
  FOV14_RS14675 (FOV14_14800) - 3016615..3017091 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  FOV14_RS14680 (FOV14_14805) - 3017091..3017375 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  FOV14_RS14685 (FOV14_14810) mnhG 3017359..3017733 (+) 375 WP_015387785.1 monovalent cation/H(+) antiporter subunit G -
  FOV14_RS14690 (FOV14_14815) - 3017773..3018156 (-) 384 WP_139885447.1 hotdog fold thioesterase -
  FOV14_RS14695 (FOV14_14820) comA 3018178..3018822 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  FOV14_RS14700 (FOV14_14825) comP 3018903..3021209 (-) 2307 WP_069448952.1 sensor histidine kinase Regulator
  FOV14_RS14705 (FOV14_14830) comX 3021228..3021404 (-) 177 WP_044052947.1 competence pheromone ComX -
  FOV14_RS14710 (FOV14_14835) - 3021419..3022315 (-) 897 WP_017419425.1 polyprenyl synthetase family protein -
  FOV14_RS14715 (FOV14_14840) degQ 3022446..3022586 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  FOV14_RS14720 (FOV14_14850) - 3023052..3023393 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=374319 FOV14_RS14695 WP_003152052.1 3018178..3018822(-) (comA) [Bacillus velezensis strain IM1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=374319 FOV14_RS14695 WP_003152052.1 3018178..3018822(-) (comA) [Bacillus velezensis strain IM1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment