Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FNB21_RS03170 Genome accession   NZ_CP041519
Coordinates   252919..253341 (+) Length   140 a.a.
NCBI ID   WP_140456946.1    Uniprot ID   -
Organism   Priestia aryabhattai strain KNU10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 247919..258341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNB21_RS03145 - 248251..249084 (-) 834 WP_098288094.1 AraC family transcriptional regulator -
  FNB21_RS03150 - 249308..250129 (+) 822 WP_053487481.1 sensor histidine kinase -
  FNB21_RS03155 - 250130..250771 (+) 642 WP_057273553.1 response regulator transcription factor -
  FNB21_RS03160 - 250903..252284 (+) 1382 Protein_298 PepSY-associated TM helix domain-containing protein -
  FNB21_RS03165 - 252314..252778 (+) 465 WP_140456945.1 FixH family protein -
  FNB21_RS03170 nucA/comI 252919..253341 (+) 423 WP_140456946.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  FNB21_RS03175 - 253495..253848 (+) 354 WP_223272376.1 DUF1516 family protein -
  FNB21_RS03180 - 253889..254482 (-) 594 WP_013057951.1 hypothetical protein -
  FNB21_RS03185 - 254638..255294 (-) 657 WP_029322917.1 TetR/AcrR family transcriptional regulator -
  FNB21_RS03190 - 255318..256598 (-) 1281 WP_228540830.1 glycosyltransferase -
  FNB21_RS03195 - 256896..257441 (+) 546 WP_064471863.1 GNAT family N-acetyltransferase -
  FNB21_RS03200 - 257741..258226 (-) 486 WP_029322922.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15310.13 Da        Isoelectric Point: 4.4982

>NTDB_id=372240 FNB21_RS03170 WP_140456946.1 252919..253341(+) (nucA/comI) [Priestia aryabhattai strain KNU10]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADHYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=372240 FNB21_RS03170 WP_140456946.1 252919..253341(+) (nucA/comI) [Priestia aryabhattai strain KNU10]
TTGAAAAAAATTGTTTCTGGAATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCATTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGACCGAGACGGGGCTGAGGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCCGATAT
TGAATATGTAAAGCCTTCAGACAATCGAGGCGCCGGGTCTTGGATCTCACATCAAGTAGACGAGTTTCCTGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.345

82.857

0.5

Multiple sequence alignment