Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   FAY30_RS16615 Genome accession   NZ_CP039727
Coordinates   3433460..3435148 (-) Length   562 a.a.
NCBI ID   WP_149870914.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3428460..3440148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS16585 (FAY30_16585) - 3429563..3429796 (+) 234 WP_149872753.1 DUF2627 domain-containing protein -
  FAY30_RS16595 (FAY30_16595) - 3429984..3430712 (-) 729 WP_149870910.1 glycerophosphodiester phosphodiesterase -
  FAY30_RS16600 (FAY30_16600) - 3430751..3430888 (+) 138 WP_149870911.1 YycC family protein -
  FAY30_RS16605 (FAY30_16605) spo0A 3430953..3431744 (-) 792 WP_149870912.1 sporulation transcription factor Spo0A Regulator
  FAY30_RS16610 (FAY30_16610) spoIVB 3432043..3433338 (-) 1296 WP_149870913.1 SpoIVB peptidase -
  FAY30_RS16615 (FAY30_16615) recN 3433460..3435148 (-) 1689 WP_149870914.1 DNA repair protein RecN Machinery gene
  FAY30_RS16620 (FAY30_16620) ahrC 3435165..3435614 (-) 450 WP_149870915.1 transcriptional regulator AhrC/ArgR -
  FAY30_RS16625 (FAY30_16625) - 3435761..3436603 (-) 843 WP_149870916.1 TlyA family RNA methyltransferase -
  FAY30_RS16630 (FAY30_16630) dxs 3436600..3438498 (-) 1899 WP_149872754.1 1-deoxy-D-xylulose-5-phosphate synthase -
  FAY30_RS16635 (FAY30_16635) - 3438645..3439538 (-) 894 WP_149870917.1 polyprenyl synthetase family protein -
  FAY30_RS16640 (FAY30_16640) - 3439542..3439775 (-) 234 WP_149870918.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63353.47 Da        Isoelectric Point: 5.5285

>NTDB_id=360464 FAY30_RS16615 WP_149870914.1 3433460..3435148(-) (recN) [Bacillus sp. S3]
MLAELSIKNFAIIEALSISFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEEKAEIEGLFQLDAPDHPIMLK
ALEFGIDIEEGMVVLRRDISRTGKSVCRINGKLVTISTLREIGGTLVDIHGQHEHQELMDETRHLPLLDQFGFEEIQPAL
REYLQVYRRYEHTLHKLKQLSENDQQTAHRLDLIQFQLDEIQKANLKPNEDDELAEEKRKLGNFERVFESIQSGYTALHG
EQKGLDWIGMVMGSLEDAASLDPAYKDIFESVSNSFYQLEDAARTLRNELDVLEYDPGRLNEIEDRLNEINQLKRKYGKT
IDEIVEYAAKIEEEIETLQNKETHIGELEKELVSIKKDLVLEAKQLTELRHKWAQKLTKLIHKELKELYMAKTVFEIRFE
STLQHFSKNGVDHVGFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIY
KVASGSQVLCISHLPQVAAMADTHLFISKVIKSGRTKTSVTPLDVEEKIKEIGRMISGAEITDLTKKHAEELLQLAVKTK
VN

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=360464 FAY30_RS16615 WP_149870914.1 3433460..3435148(-) (recN) [Bacillus sp. S3]
TTGTTAGCAGAACTATCAATAAAAAATTTCGCCATTATCGAAGCCTTATCCATCTCGTTTGAAAAAGGATTAACTGTTTT
AACCGGAGAAACCGGTGCCGGAAAGTCCATTATTATTGATGCGATTCATTTACTTGTTGGCGGAAGGGGATCGGCAGAAT
TTGTCCGTCACGGTGAAGAAAAGGCAGAAATAGAAGGGTTATTCCAGTTAGATGCCCCTGACCATCCAATTATGTTGAAA
GCACTGGAATTCGGAATCGATATTGAAGAAGGTATGGTGGTTTTACGGCGCGATATTTCTCGTACAGGAAAAAGCGTCTG
CCGTATTAACGGAAAATTAGTAACGATTTCAACACTACGGGAAATTGGCGGCACGCTTGTAGATATCCACGGTCAGCATG
AGCATCAGGAACTGATGGATGAAACAAGACATTTACCATTGCTCGATCAATTTGGCTTTGAGGAAATACAGCCGGCGCTA
CGTGAATATTTGCAGGTTTATCGCAGATACGAACATACTTTACATAAGTTAAAGCAATTGAGTGAAAATGATCAGCAGAC
AGCCCATCGACTTGATTTAATTCAATTTCAATTAGATGAAATTCAAAAGGCCAACTTAAAGCCTAATGAAGATGATGAGC
TTGCCGAGGAAAAAAGGAAACTGGGGAATTTTGAACGGGTATTTGAATCCATCCAATCAGGTTATACTGCCTTACATGGT
GAACAGAAGGGGCTTGATTGGATTGGAATGGTCATGGGCTCCCTAGAGGATGCTGCCTCACTTGACCCGGCATATAAAGA
TATATTTGAATCCGTATCGAACAGTTTCTATCAATTGGAAGATGCAGCCCGGACATTACGAAATGAATTGGATGTATTAG
AATATGATCCTGGGCGGTTAAATGAAATTGAAGACCGCTTAAATGAAATTAATCAGCTCAAACGAAAATATGGCAAAACA
ATTGATGAAATTGTTGAATATGCAGCAAAAATTGAAGAAGAGATCGAAACACTGCAAAATAAAGAAACGCATATTGGAGA
ACTGGAAAAAGAATTAGTTTCAATAAAAAAAGACTTAGTTCTGGAAGCAAAACAATTAACGGAACTGCGGCATAAATGGG
CCCAAAAGCTGACAAAATTAATCCATAAAGAACTAAAGGAATTGTATATGGCGAAAACGGTTTTTGAGATCCGCTTTGAA
TCAACCCTGCAGCATTTTTCAAAAAATGGTGTTGACCACGTAGGATTTTATATCTCAACAAATCCTGGAGAACCATTAAA
GCCGTTATCAAAAGTTGCATCCGGCGGGGAATTATCGCGAATTATGTTGGCTCTTAAAAGCATTTTTTCAAAGCATCAAG
GAGTTACTTCCATTATTTTTGACGAGGTAGATACTGGCGTGAGTGGAAGAGTTGCCCAATCCATTGCGGAAAAAATCTAT
AAAGTGGCTTCCGGTTCACAAGTATTGTGTATCTCCCATTTACCACAGGTGGCAGCTATGGCGGATACGCATTTGTTTAT
TTCAAAGGTTATTAAAAGCGGAAGAACAAAAACGTCTGTCACTCCTTTAGATGTTGAAGAAAAAATAAAAGAAATCGGTC
GAATGATTTCTGGTGCCGAAATCACTGATTTAACGAAAAAACATGCAGAGGAATTACTGCAATTAGCAGTAAAAACGAAG
GTAAATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.285

100

0.628

Multiple sequence alignment