Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | E1H52_RS07330 | Genome accession | NZ_CP037797 |
| Coordinates | 1608012..1609058 (-) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain Cd29 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1561782..1627413 | 1608012..1609058 | within | 0 |
Gene organization within MGE regions
Location: 1561782..1627413
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E1H52_RS07105 (E1H52_07315) | - | 1562433..1563131 (-) | 699 | WP_003438451.1 | putative phage tail protein | - |
| E1H52_RS07110 (E1H52_07320) | - | 1563128..1564180 (-) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| E1H52_RS07115 (E1H52_07325) | - | 1564173..1564601 (-) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| E1H52_RS07120 (E1H52_07330) | - | 1564601..1564927 (-) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| E1H52_RS07125 (E1H52_07335) | - | 1564943..1566688 (-) | 1746 | WP_043896619.1 | XkdQ/YqbQ family protein | - |
| E1H52_RS07130 (E1H52_07340) | - | 1566754..1567176 (-) | 423 | WP_003428168.1 | phage baseplate protein | - |
| E1H52_RS07135 (E1H52_07345) | - | 1567176..1569629 (-) | 2454 | WP_003438437.1 | hypothetical protein | - |
| E1H52_RS07140 (E1H52_07350) | - | 1569629..1569796 (-) | 168 | WP_003419648.1 | hypothetical protein | - |
| E1H52_RS07145 (E1H52_07355) | - | 1569823..1570269 (-) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| E1H52_RS07150 (E1H52_07360) | - | 1570383..1570811 (-) | 429 | WP_003419646.1 | phage tail tube protein | - |
| E1H52_RS07155 (E1H52_07365) | - | 1570825..1571889 (-) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| E1H52_RS07160 (E1H52_07370) | - | 1571894..1572337 (-) | 444 | WP_003438413.1 | phage tail terminator family protein | - |
| E1H52_RS07165 (E1H52_07375) | - | 1572586..1573026 (-) | 441 | WP_003428183.1 | hypothetical protein | - |
| E1H52_RS07170 (E1H52_07380) | - | 1573131..1573328 (-) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| E1H52_RS07175 (E1H52_07385) | - | 1573496..1573816 (+) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| E1H52_RS07180 (E1H52_07390) | - | 1573898..1574404 (+) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| E1H52_RS07185 (E1H52_07400) | - | 1575105..1575860 (+) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| E1H52_RS07190 (E1H52_07405) | - | 1576003..1576431 (-) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| E1H52_RS07195 (E1H52_07410) | - | 1576852..1577052 (-) | 201 | WP_003419624.1 | cold-shock protein | - |
| E1H52_RS07200 (E1H52_07415) | - | 1577235..1578389 (-) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| E1H52_RS07205 (E1H52_07420) | - | 1578641..1579462 (+) | 822 | WP_021364435.1 | pyridoxamine kinase | - |
| E1H52_RS07210 (E1H52_07425) | - | 1579538..1580926 (-) | 1389 | WP_021364432.1 | two-component system sensor histidine kinase | - |
| E1H52_RS07215 (E1H52_07430) | - | 1581061..1581819 (-) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| E1H52_RS07220 (E1H52_07435) | - | 1581821..1582537 (-) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| E1H52_RS07225 (E1H52_07440) | - | 1582539..1583246 (-) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| E1H52_RS07230 (E1H52_07445) | - | 1583362..1583898 (-) | 537 | WP_003428196.1 | lipoprotein | - |
| E1H52_RS19560 | - | 1584000..1584689 (-) | 690 | WP_235694353.1 | hypothetical protein | - |
| E1H52_RS19565 | - | 1584707..1585069 (-) | 363 | WP_235694354.1 | hypothetical protein | - |
| E1H52_RS07240 (E1H52_07455) | - | 1585062..1586118 (-) | 1057 | Protein_1467 | DUF1700 domain-containing protein | - |
| E1H52_RS07245 (E1H52_07460) | - | 1586105..1586437 (-) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| E1H52_RS07250 (E1H52_07465) | - | 1586636..1587757 (+) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| E1H52_RS07255 (E1H52_07470) | - | 1587885..1589783 (-) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| E1H52_RS07260 (E1H52_07475) | - | 1590098..1590874 (+) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| E1H52_RS07265 (E1H52_07480) | - | 1590966..1591718 (-) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| E1H52_RS07270 (E1H52_07485) | galT | 1591879..1592829 (-) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| E1H52_RS07275 (E1H52_07490) | - | 1593214..1594410 (+) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| E1H52_RS07280 (E1H52_07495) | - | 1594522..1595868 (-) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| E1H52_RS07285 (E1H52_07500) | - | 1596001..1596753 (-) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| E1H52_RS07290 (E1H52_07505) | - | 1596901..1598478 (-) | 1578 | WP_021364419.1 | PTS transporter subunit EIIC | - |
| E1H52_RS07295 (E1H52_07510) | - | 1598891..1599343 (-) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| E1H52_RS07300 (E1H52_07515) | purB | 1599653..1601098 (-) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| E1H52_RS07305 (E1H52_07520) | - | 1601242..1602150 (-) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| E1H52_RS07310 (E1H52_07525) | - | 1602407..1603231 (+) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| E1H52_RS07315 (E1H52_07530) | lepB | 1603271..1603801 (+) | 531 | WP_009902411.1 | signal peptidase I | - |
| E1H52_RS07320 (E1H52_07535) | - | 1603883..1605664 (-) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| E1H52_RS07325 (E1H52_07540) | rny | 1606297..1607836 (-) | 1540 | Protein_1484 | ribonuclease Y | - |
| E1H52_RS07330 (E1H52_07545) | recA | 1608012..1609058 (-) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| E1H52_RS07335 (E1H52_07550) | pgsA | 1609345..1609887 (-) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| E1H52_RS07340 (E1H52_07555) | rimO | 1609874..1611208 (-) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| E1H52_RS07345 (E1H52_07560) | mnmH | 1611202..1612260 (-) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| E1H52_RS07350 (E1H52_07565) | - | 1612263..1614674 (-) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| E1H52_RS07355 (E1H52_07570) | - | 1614797..1615531 (-) | 735 | WP_021364422.1 | ClpP family protease | - |
| E1H52_RS07360 (E1H52_07575) | dapG | 1615643..1616866 (-) | 1224 | WP_003438324.1 | aspartate kinase | - |
| E1H52_RS07365 (E1H52_07580) | - | 1616876..1617121 (-) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| E1H52_RS07370 (E1H52_07585) | - | 1617156..1618403 (-) | 1248 | WP_009902409.1 | M16 family metallopeptidase | - |
| E1H52_RS07375 (E1H52_07590) | - | 1618561..1619304 (-) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| E1H52_RS07380 (E1H52_07595) | pnp | 1619570..1621681 (-) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| E1H52_RS07385 (E1H52_07600) | - | 1621806..1622651 (-) | 846 | WP_009889099.1 | DegV family protein | - |
| E1H52_RS07390 (E1H52_07605) | rpsO | 1622892..1623149 (-) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| E1H52_RS07395 (E1H52_07615) | - | 1623253..1624182 (-) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| E1H52_RS07400 (E1H52_07620) | truB | 1624313..1625218 (-) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| E1H52_RS07405 (E1H52_07625) | - | 1625231..1625536 (-) | 306 | Protein_1500 | DHH family phosphoesterase | - |
| E1H52_RS07410 (E1H52_07630) | tnpB | 1625654..1626772 (-) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=349955 E1H52_RS07330 WP_021364420.1 1608012..1609058(-) (recA) [Clostridioides difficile strain Cd29]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=349955 E1H52_RS07330 WP_021364420.1 1608012..1609058(-) (recA) [Clostridioides difficile strain Cd29]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGC
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGC
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.