Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EXW40_RS15775 Genome accession   NZ_CP036009
Coordinates   3092129..3092407 (-) Length   92 a.a.
NCBI ID   WP_060750994.1    Uniprot ID   A0A2B8R1V0
Organism   Bacillus mycoides strain BPN43/2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3087129..3097407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW40_RS15740 (EXW40_16045) - 3087316..3088317 (-) 1002 WP_063218852.1 LacI family DNA-binding transcriptional regulator -
  EXW40_RS15745 (EXW40_16050) - 3088503..3089210 (-) 708 WP_215586605.1 IS6 family transposase -
  EXW40_RS15750 (EXW40_16055) - 3089307..3089555 (-) 249 Protein_3061 IS6 family transposase -
  EXW40_RS29740 - 3089721..3089849 (-) 129 WP_265324888.1 hypothetical protein -
  EXW40_RS15755 (EXW40_16060) - 3089867..3090229 (-) 363 WP_215586606.1 hypothetical protein -
  EXW40_RS15760 (EXW40_16065) - 3090462..3090965 (+) 504 WP_215586607.1 hypothetical protein -
  EXW40_RS15765 (EXW40_16070) - 3090955..3091422 (+) 468 WP_215586608.1 hypothetical protein -
  EXW40_RS15770 (EXW40_16075) - 3091585..3091812 (+) 228 WP_098501778.1 hypothetical protein -
  EXW40_RS15775 (EXW40_16080) abrB 3092129..3092407 (-) 279 WP_060750994.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EXW40_RS15785 (EXW40_16085) - 3092990..3093428 (-) 439 Protein_3068 SAM-dependent methyltransferase -
  EXW40_RS15790 (EXW40_16090) - 3093685..3094209 (-) 525 WP_215586609.1 ester cyclase -
  EXW40_RS15795 (EXW40_16095) - 3094363..3094755 (-) 393 WP_098169077.1 nuclear transport factor 2 family protein -
  EXW40_RS15800 (EXW40_16100) - 3094760..3095581 (-) 822 WP_061689679.1 MBL fold metallo-hydrolase -
  EXW40_RS15805 (EXW40_16105) - 3095876..3096496 (-) 621 WP_002033220.1 DsbA family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10063.73 Da        Isoelectric Point: 6.3325

>NTDB_id=345832 EXW40_RS15775 WP_060750994.1 3092129..3092407(-) (abrB) [Bacillus mycoides strain BPN43/2]
MKATGVTRKVDDLGRVVIPKELRNTLGIKEKSPLEIFVEGEDIILQKYQPGGVCALTGEVSNRNISLANGKITLSPEGAE
LLIKEVEQYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=345832 EXW40_RS15775 WP_060750994.1 3092129..3092407(-) (abrB) [Bacillus mycoides strain BPN43/2]
ATGAAAGCAACCGGAGTGACTAGAAAAGTAGATGATTTAGGGCGTGTAGTAATTCCAAAGGAACTTAGAAATACGCTAGG
TATTAAAGAAAAATCACCATTAGAGATCTTTGTAGAAGGTGAAGACATTATTTTACAGAAATATCAGCCCGGTGGTGTTT
GTGCATTAACAGGAGAGGTATCAAATCGTAACATATCATTAGCAAACGGTAAGATAACATTGAGTCCAGAAGGTGCCGAA
CTATTAATAAAAGAAGTAGAACAGTACCTTGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B8R1V0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

61.111

97.826

0.598

Multiple sequence alignment