Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW61_RS18665 Genome accession   NZ_CP036004
Coordinates   3602672..3603274 (+) Length   200 a.a.
NCBI ID   WP_002030800.1    Uniprot ID   A0A366GKC2
Organism   Bacillus mycoides strain BPN37/2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3597672..3608274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW61_RS18630 (EXW61_19010) - 3598082..3598636 (-) 555 WP_002030808.1 DUF1273 domain-containing protein -
  EXW61_RS18635 (EXW61_19015) - 3598693..3599118 (-) 426 WP_215598909.1 CotD family spore coat protein -
  EXW61_RS18640 (EXW61_19020) - 3599275..3599937 (-) 663 WP_078184204.1 YppG family protein -
  EXW61_RS18645 (EXW61_19025) - 3600115..3600306 (+) 192 WP_002030817.1 YppF family protein -
  EXW61_RS18650 (EXW61_19030) - 3600332..3600676 (-) 345 WP_002011864.1 YppE family protein -
  EXW61_RS18655 (EXW61_19035) - 3600692..3600934 (-) 243 WP_002030820.1 hypothetical protein -
  EXW61_RS31115 - 3601053..3601199 (+) 147 WP_306302660.1 phage portal protein -
  EXW61_RS18660 (EXW61_19040) - 3601543..3602568 (-) 1026 WP_098168523.1 DUF2515 domain-containing protein -
  EXW61_RS18665 (EXW61_19045) recU 3602672..3603274 (+) 603 WP_002030800.1 Holliday junction resolvase RecU Machinery gene
  EXW61_RS18670 (EXW61_19050) - 3603341..3606073 (+) 2733 WP_098168524.1 PBP1A family penicillin-binding protein -
  EXW61_RS18675 (EXW61_19055) - 3606101..3606619 (-) 519 WP_002189007.1 YpoC family protein -
  EXW61_RS18680 (EXW61_19060) nth 3606623..3607270 (-) 648 WP_000933020.1 endonuclease III -
  EXW61_RS18685 (EXW61_19065) dnaD 3607286..3607993 (-) 708 WP_012260639.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23347.59 Da        Isoelectric Point: 9.5601

>NTDB_id=345776 EXW61_RS18665 WP_002030800.1 3602672..3603274(+) (recU) [Bacillus mycoides strain BPN37/2]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=345776 EXW61_RS18665 WP_002030800.1 3602672..3603274(+) (recU) [Bacillus mycoides strain BPN37/2]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GKC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment