Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GHR20_RS24650 Genome accession   NZ_CP045740
Coordinates   5608278..5610011 (-) Length   577 a.a.
NCBI ID   WP_111582118.1    Uniprot ID   -
Organism   Streptomyces sp. SUK 48     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5603278..5615011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - rcrP 5608278..5610011 (-) 1734 - - Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62707.12 Da        Isoelectric Point: 6.6983

>NTDB_id=345744 GHR20_RS24650 WP_111582118.1 5608278..5610011(-) (rcrP) [Streptomyces sp. SUK 48]
MLIRLLRTYLRPYKKPITVQVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYLGA
RTASALGRDMRAAVFDRVQSFSSREVGHFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LIAVVPVLAVCVTLIVRRLRPLFRTMQTRLDKVNRVLREQITGNRVIRAFVRDEYEQARFARVNGELTEMQLATGRLLSL
MFPMVMTVVNVSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVMDTGSSVLP
PLAPVTELRRHGHLEIRAAGFRYPGAEEAVLHAVELTARPGEITAVIGSTGSGKSTLLGLVPRLFDATEGEVLVNGVDVR
EVEPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVTELEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIIVLDEGRVVGSGRHQELMAGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=345744 GHR20_RS24650 WP_111582118.1 5608278..5610011(-) (rcrP) [Streptomyces sp. SUK 48]
GTGCTCATACGACTTCTACGGACCTATCTCAGGCCCTACAAGAAACCCATCACCGTTCAGGTCCTGCTCCAGTTCCTGCA
GACCTGCGCCACCCTGTACCTGCCCACGCTGAACGCCCACATCATCGACAACGGCGTCGTGAAGGGCGACACGGGCTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGCATCTCGCTGGTGCAGGTCGTGTGCAACATCGGCGCCGTCTACCTGGGCGCC
CGTACCGCCTCGGCGCTCGGCCGGGACATGCGCGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCTCCCGTGAGGTGGG
TCACTTCGGCGCGCCCTCGCTCATCACCCGCACGACGAACGACGTCCAGCAGATCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGCATCGTGCTGGCGCTCGGCCTCGACGTGCCGCTGTCCGGGGTG
CTGATCGCGGTCGTCCCGGTGCTGGCCGTCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGCACCATGCA
GACCCGCCTGGACAAGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGGCCCGCTTCGCCCGGGTCAACGGCGAGCTGACCGAGATGCAGCTGGCCACCGGGCGGCTGCTGTCGCTG
ATGTTCCCGATGGTGATGACCGTGGTGAACGTGTCCTCCATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGGGTCCAGGAGGTCATGGACACCGGGTCCAGCGTGCTGCCG
CCGCTCGCCCCGGTCACCGAGCTGCGCCGGCACGGGCATCTGGAGATCCGCGCGGCCGGCTTCCGCTATCCGGGGGCCGA
GGAGGCGGTGCTGCACGCCGTGGAGCTGACGGCGCGGCCCGGCGAGATCACGGCCGTGATCGGGTCCACCGGCAGCGGCA
AGTCGACCCTGCTCGGGCTGGTCCCGCGGCTCTTCGACGCCACCGAGGGCGAGGTCCTGGTGAACGGCGTGGACGTCCGC
GAGGTCGAGCCGGCGCTGCTGGCGCGCACGGTCGGGCTCGTGCCGCAGAAGCCGTACCTCTTCGCGGGCACCGTCGCCAC
GAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAACTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGGTTCG
TCACCGAGCTGGAGGGCGGCCTGAACGCGCCGATCGCCCAGGGCGGCACCAATGTGTCGGGCGGTCAGCGCCAGCGGCTC
GCGATCGCGCGCACGCTGGTGCAGCGCCCGGAGATCTACCTGTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGGGCCGCGCTGGCGCAGGAGACCGCCGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTGGTCGGCTCCGGCCGGCACCAGGAGCTGATGGCGGGCAAC
GACACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.071

97.747

0.392

Multiple sequence alignment