Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EXW27_RS20830 Genome accession   NZ_CP035999
Coordinates   4056880..4057626 (+) Length   248 a.a.
NCBI ID   WP_078177910.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN37/1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4051880..4062626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW27_RS20800 (EXW27_21175) - 4052169..4054313 (+) 2145 WP_002015188.1 HD family phosphohydrolase -
  EXW27_RS20805 (EXW27_21180) ybeY 4054310..4054780 (+) 471 WP_002088675.1 rRNA maturation RNase YbeY -
  EXW27_RS20810 (EXW27_21185) - 4054777..4055130 (+) 354 WP_002129138.1 diacylglycerol kinase family protein -
  EXW27_RS20815 (EXW27_21190) - 4055230..4055628 (+) 399 WP_002015184.1 cytidine deaminase -
  EXW27_RS20820 (EXW27_21195) era 4055621..4056526 (+) 906 WP_002088672.1 GTPase Era -
  EXW27_RS20825 (EXW27_21200) - 4056703..4056846 (+) 144 WP_000883924.1 YqzL family protein -
  EXW27_RS20830 (EXW27_21205) recO 4056880..4057626 (+) 747 WP_078177910.1 DNA repair protein RecO Machinery gene
  EXW27_RS20835 (EXW27_21210) - 4057733..4058365 (+) 633 WP_002015181.1 helix-turn-helix transcriptional regulator -
  EXW27_RS20840 (EXW27_21215) - 4058395..4059207 (+) 813 WP_002184948.1 pyruvate, water dikinase regulatory protein -
  EXW27_RS20845 (EXW27_21225) dnaG 4060097..4061899 (+) 1803 WP_002167658.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28654.20 Da        Isoelectric Point: 8.0540

>NTDB_id=345744 EXW27_RS20830 WP_078177910.1 4056880..4057626(+) (recO) [Bacillus mycoides strain BPN37/1]
MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIIELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTVLNTYYDEYCGVYLKTRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=345744 EXW27_RS20830 WP_078177910.1 4056880..4057626(+) (recO) [Bacillus mycoides strain BPN37/1]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGTACGACAGATTACGGAGAAACAAATAAGATTGTTACAATATACTCGCG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAGCCGAAGAGTCGGTTAGCAGCTATTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTATTGAATTAACCGATAAAGCAACAGAAGATAAGAAGCA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCGGAGCAAGATCCGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCACTTTGATTTACACCGGCTCGGTAATGTATCGGTGAAGGATAGTA
CAAAAAAACAAATGCGCACAGTATTGAATACATATTATGACGAATATTGTGGGGTTTATTTGAAAACAAGGCGTTTCTTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment