Detailed information NTG0034389

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: SDEG_RS04210
• Genome accession: NC_012891
• Coordinates: 836620..837849 (+)
• Length: 409 a.a.
• NCBI ID: WP_003054192.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis GGS_124
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 831620..842849

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDEG_RS04185 (SDEG_0843)	-	832323..833504 (-)	1182	WP_003062183.1	hydroxymethylglutaryl-CoA synthase	-
SDEG_RS04190 (SDEG_0844)	-	833692..834714 (-)	1023	WP_171841606.1	IS30 family transposase	-
SDEG_RS04195 (SDEG_0845)	-	834899..835738 (+)	840	WP_003054196.1	thymidylate synthase	-
SDEG_RS04200 (SDEG_0846)	-	835819..836316 (+)	498	WP_003054187.1	dihydrofolate reductase	-
SDEG_RS11175 (SDEG_0847)	-	836336..836506 (+)	171	WP_003054200.1	hypothetical protein	-
SDEG_RS04210 (SDEG_0848)	clpX	836620..837849 (+)	1230	WP_003054192.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
SDEG_RS04215 (SDEG_0849)	yihA	837859..838458 (+)	600	WP_012766850.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
SDEG_RS04220 (SDEG_0850)	-	838602..839345 (+)	744	WP_012766851.1	hypothetical protein	-
SDEG_RS04225 (SDEG_0851)	clpC	839402..841501 (-)	2100	WP_012766852.1	AAA family ATPase	Regulator
SDEG_RS04230 (SDEG_0852)	-	841774..842637 (-)	864	WP_012766853.1	IS982 family transposase	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45060.54 Da
• Isoelectric Point: 4.5866

>NTDB_id=34389 SDEG_RS04210 WP_003054192.1 836620..837849(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MAGNRTNDIKVYCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEVLNQYVVGQDR
AKRALSVAVYNHYKRVSFTESRDDEDVELQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEDIVKQRLGEKVIGFGQNSRKIDDNASYMQEIISEDIQKFGLIPEFIGRLPVVAALEQLNTSDLIQI
LTEPRNALVKQYQALLSYDGVELAFDKEALEAIANKAIERKTGARGLRSIIEETMLDIMFEIPSQEDVTKVRITKAAVEG
KSKPVLETA

Nucleotide

• Length: 1230 bp

>NTDB_id=34389 SDEG_RS04210 WP_003054192.1 836620..837849(+) (clpX) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGGCAGGAAATCGTACAAACGATATTAAAGTATATTGCTCATTTTGTGGTAAGAGCCAAGACGAAGTCAAAAAAATTAT
TGCAGGGAATAATGTTTTTATCTGTAATGAATGTGTGGCTTTGTCACAAGAAATTATTAAAGAAGAGTTGGCAGAAGAAG
TGTTAGCTGACCTAACAGAAGTTCCAAAACCAAAAGAACTCCTTGAGGTTTTAAACCAGTATGTTGTTGGTCAAGATCGT
GCCAAACGTGCTTTATCAGTAGCTGTTTACAATCATTACAAACGCGTGTCATTCACGGAAAGTCGTGATGATGAAGATGT
TGAATTGCAAAAATCAAACATTTTAATGATTGGTCCAACAGGTTCAGGAAAGACTTTTCTCGCTCAAACCTTAGCTAAGA
GCTTAAATGTTCCTTTTGCGATTGCTGATGCAACCTCACTGACTGAAGCAGGGTATGTTGGAGAAGATGTGGAAAATATT
CTTCTCAAGCTTATCCAAGCAGCTGATTATAATGTGGAACGAGCAGAGCGTGGTATCATCTATGTCGATGAAATTGATAA
GATTGCTAAAAAAGGTGAAAATGTGTCCATCACACGTGATGTTTCTGGTGAGGGAGTTCAACAGGCCTTGCTAAAAATCA
TTGAAGGAACGGTTGCTAGTGTTCCTCCTCAAGGCGGTCGTAAGCATCCAAATCAGGAAATGATTCAAATTGATACCAAG
AATATCTTGTTTATTGTTGGGGGAGCCTTTGATGGCATTGAAGACATTGTCAAACAACGTTTAGGAGAAAAAGTCATTGG
TTTTGGTCAAAACAGCCGAAAAATCGATGACAATGCTTCTTATATGCAAGAGATTATTTCAGAAGATATCCAAAAATTTG
GTCTTATCCCAGAGTTTATTGGACGCTTGCCAGTCGTAGCTGCTCTTGAACAACTAAACACATCAGATTTGATTCAAATT
TTGACGGAACCAAGAAATGCCCTAGTCAAGCAATATCAGGCTCTTCTTTCTTACGATGGTGTCGAATTGGCATTTGATAA
GGAAGCCTTAGAAGCCATTGCAAATAAAGCCATTGAGCGTAAGACAGGCGCGCGTGGTCTTCGTTCTATTATCGAAGAAA
CGATGTTAGACATTATGTTTGAAATTCCAAGCCAAGAAGATGTCACAAAAGTGCGTATCACCAAGGCTGCTGTCGAAGGC
AAGTCAAAACCCGTTTTAGAGACAGCTTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-391)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	89.487	100	0.895
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.853	98.044	0.577