Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EFD52_RS09455 Genome accession   NZ_CP033606
Coordinates   1933931..1934869 (-) Length   312 a.a.
NCBI ID   WP_004254589.1    Uniprot ID   A0A2X0QYG5
Organism   Lactococcus lactis strain IL6288     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1928931..1939869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD52_RS09430 (EFD52_09430) frr 1929049..1929606 (-) 558 WP_004254618.1 ribosome recycling factor -
  EFD52_RS09435 (EFD52_09435) pyrH 1929818..1930534 (-) 717 WP_004254608.1 UMP kinase -
  EFD52_RS09440 (EFD52_09440) - 1930619..1931071 (-) 453 WP_010906263.1 hypothetical protein -
  EFD52_RS09445 (EFD52_09445) - 1931205..1932392 (-) 1188 WP_010906264.1 acetate kinase -
  EFD52_RS09450 (EFD52_09450) - 1932549..1933736 (-) 1188 WP_004254593.1 acetate kinase -
  EFD52_RS09455 (EFD52_09455) comYH 1933931..1934869 (-) 939 WP_004254589.1 class I SAM-dependent methyltransferase Machinery gene
  EFD52_RS09460 (EFD52_09460) - 1934957..1935208 (-) 252 WP_004254583.1 DUF3165 family protein -
  EFD52_RS09465 (EFD52_09465) typA 1935305..1937137 (-) 1833 WP_025016832.1 translational GTPase TypA -
  EFD52_RS09470 (EFD52_09470) - 1937325..1937783 (-) 459 WP_010906266.1 hypothetical protein -
  EFD52_RS09475 (EFD52_09475) - 1937799..1938572 (-) 774 WP_004254570.1 hypothetical protein -
  EFD52_RS09480 (EFD52_09480) - 1938909..1939535 (-) 627 WP_010906267.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34754.93 Da        Isoelectric Point: 4.4060

>NTDB_id=324333 EFD52_RS09455 WP_004254589.1 1933931..1934869(-) (comYH) [Lactococcus lactis strain IL6288]
MDMEKVAQGFELVVANIMLLSEKLGTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAIITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=324333 EFD52_RS09455 WP_004254589.1 1933931..1934869(-) (comYH) [Lactococcus lactis strain IL6288]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGGTACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCGGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTATCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0QYG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.562

100

0.487
  comYH Streptococcus mutans UA159

48.243

100

0.484

Multiple sequence alignment