Detailed information NTG0315124

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: D3X12_RS13705
• Genome accession: NZ_CP032358
• Coordinates: 2952304..2954535 (+)
• Length: 743 a.a.
• NCBI ID: WP_011060099.1
• Uniprot ID: Q4KFT8
• Organism: Pseudomonas protegens strain pf5
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2947304..2959535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3X12_RS13680 (D3X12_13640)	-	2948429..2949088 (+)	660	WP_011060094.1	transglutaminase family protein	-
D3X12_RS13685 (D3X12_13645)	-	2949131..2949754 (+)	624	WP_011060095.1	glutathione S-transferase family protein	-
D3X12_RS13690 (D3X12_13650)	-	2949887..2950819 (+)	933	WP_011060096.1	ABC transporter ATP-binding protein	-
D3X12_RS13695 (D3X12_13655)	-	2950816..2951595 (+)	780	WP_011060097.1	ABC transporter permease	-
D3X12_RS13700 (D3X12_13660)	-	2951649..2952164 (-)	516	WP_011060098.1	DUF2062 domain-containing protein	-
D3X12_RS13705 (D3X12_13665)	comA	2952304..2954535 (+)	2232	WP_011060099.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
D3X12_RS13710 (D3X12_13670)	exbB	2954638..2955273 (+)	636	WP_011060100.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
D3X12_RS13715 (D3X12_13675)	-	2955270..2955698 (+)	429	WP_011060101.1	biopolymer transporter ExbD	-
D3X12_RS13720 (D3X12_13680)	lpxK	2955698..2956708 (+)	1011	WP_011060102.1	tetraacyldisaccharide 4'-kinase	-
D3X12_RS13725 (D3X12_13685)	-	2956733..2956918 (+)	186	WP_011060103.1	Trm112 family protein	-
D3X12_RS13730 (D3X12_13690)	kdsB	2956915..2957679 (+)	765	WP_011060104.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
D3X12_RS13735 (D3X12_13695)	-	2957679..2958143 (+)	465	WP_011060105.1	low molecular weight protein-tyrosine-phosphatase	-
D3X12_RS13740 (D3X12_13700)	murB	2958140..2959159 (+)	1020	WP_011060106.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81335.70 Da
• Isoelectric Point: 10.8644

>NTDB_id=315124 D3X12_RS13705 WP_011060099.1 2952304..2954535(+) (comA) [Pseudomonas protegens strain pf5]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLESQTRWLEG
RVSGLPEQAGGVVRFELEDAQARRERLPRRMRLAWHEGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLARHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAIGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLPVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GAFGAAHGLREQRRFWREPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=315124 D3X12_RS13705 WP_011060099.1 2952304..2954535(+) (comA) [Pseudomonas protegens strain pf5]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCGGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTCTCCGCGCAGTCGGCCCTTGATGATCGCCTGGCGCCGCGCCTGGAGTCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCGGCT
GCCCCGGCGCATGCGGCTGGCCTGGCATGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGGCACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCCCAGGGGCGCGGTGCGGGGTTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACCTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGGCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCATTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGCCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTCCTGGCGGTC
TGGCCACCCCTGGCGCGCGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGTACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAACCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCAGCGGCGACCGACGGCA
ATCAGGCTTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTCACCGGGGACATCGACGCCCGTGCCGAA
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCACCCCATCACGGCAGCCGCACCTCTTCATC
CATGGCCTTGCTGCAACGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGGCGGGGCAATGCCTTCGGCCACCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGCGCCGAACAGGGCGCTCTGAGGCTGCAACTG
GGGGCTTTCGGGGCGGCGCATGGCCTTCGCGAGCAACGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

3D structure

• AlphaFold DB: Q4KFT8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.575	96.501	0.623