Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D2M30_RS13930 Genome accession   NZ_CP032146
Coordinates   2740220..2740972 (-) Length   250 a.a.
NCBI ID   WP_125123040.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2735220..2745972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS13905 (D2M30_13920) mreC 2735655..2736518 (-) 864 WP_013353061.1 rod shape-determining protein MreC -
  D2M30_RS13910 (D2M30_13925) mreB 2736549..2737562 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  D2M30_RS13915 (D2M30_13930) radC 2737654..2738349 (-) 696 WP_013353063.1 DNA repair protein RadC -
  D2M30_RS13920 (D2M30_13935) - 2738381..2738950 (-) 570 WP_071347940.1 nucleoside triphosphate pyrophosphatase -
  D2M30_RS13925 (D2M30_13940) - 2739092..2740093 (-) 1002 WP_125123039.1 SPOR domain-containing protein -
  D2M30_RS13930 (D2M30_13945) comC 2740220..2740972 (-) 753 WP_125123040.1 A24 family peptidase Machinery gene
  D2M30_RS13935 (D2M30_13950) - 2741111..2742403 (-) 1293 WP_125123041.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  D2M30_RS13940 (D2M30_13955) - 2742462..2745104 (-) 2643 WP_125123042.1 valine--tRNA ligase -
  D2M30_RS13945 (D2M30_13960) - 2745555..2745746 (+) 192 WP_013353069.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26827.47 Da        Isoelectric Point: 9.0670

>NTDB_id=314040 D2M30_RS13930 WP_125123040.1 2740220..2740972(-) (comC) [Bacillus amyloliquefaciens strain YP6]
MLLILFLLGLIFGSFFYTAACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYVLQKGRCRNCRGKLSIMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGEELFS
FYIKLASGGG

Nucleotide


Download         Length: 753 bp        

>NTDB_id=314040 D2M30_RS13930 WP_125123040.1 2740220..2740972(-) (comC) [Bacillus amyloliquefaciens strain YP6]
GTGCTTTTGATTCTGTTTTTGCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCCTTTTGCGGCTTGCCGCTCTCTTGGGGTGAGCTGGTGCCCGTCGTTTCTT
ATGTTCTGCAAAAAGGGAGATGCAGAAACTGCCGTGGGAAGCTGTCGATTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTTACGGCTGCCGGTATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCTCTGTTATTTCTGTCTCTATTAAT
GATTGTTACCGTGACAGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTGCCGCTTCTCATCGTCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGTGCCGTTTGCGGATTTTTTCTGCTTATTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCGGGTGATGTGAAACTGTTTGGCGTGATCGGCCTTGCGCTCGGAGTGAAGCT
CGTACTCATTGCATTCTTTCTTTCCGTTATAATCGGAGCCGTATACGGGATGTGCGCCGCAGCGGGCGGCAGGCTTGGAA
AAAAGCAGCCTTTCCCATTTGCGCCCGCCATCGCGGCCGGGAGCGCTGTGAGTTATTTATACGGTGAAGAACTGTTTTCG
TTTTACATCAAACTCGCTTCCGGAGGGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.677

99.2

0.592

Multiple sequence alignment