Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   DXX91_RS01755 Genome accession   NZ_CP031424
Coordinates   319176..319613 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 314176..324613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX91_RS19925 - 314764..314901 (-) 138 Protein_294 hypothetical protein -
  DXX91_RS01720 - 315034..316236 (+) 1203 WP_046559335.1 GTP-binding protein -
  DXX91_RS01725 - 316301..317437 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  DXX91_RS01730 - 317452..317886 (+) 435 WP_021494203.1 RDD family protein -
  DXX91_RS01735 - 317958..318278 (+) 321 WP_015388719.1 YckD family protein -
  DXX91_RS01745 - 318497..318715 (+) 219 Protein_299 family 1 glycosylhydrolase -
  DXX91_RS01750 nin/comJ 318756..319154 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  DXX91_RS01755 nucA/comI 319176..319613 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  DXX91_RS01760 hxlB 319972..320529 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  DXX91_RS01765 hxlA 320526..321161 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  DXX91_RS01770 - 321393..321755 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=306652 DXX91_RS01755 WP_003156588.1 319176..319613(-) (nucA/comI) [Bacillus velezensis strain B-4]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=306652 DXX91_RS01755 WP_003156588.1 319176..319613(-) (nucA/comI) [Bacillus velezensis strain B-4]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment