Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DWB96_RS12740 Genome accession   NZ_CP031271
Coordinates   2611686..2612195 (-) Length   169 a.a.
NCBI ID   WP_002445148.1    Uniprot ID   -
Organism   Staphylococcus caprae strain 26D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2606686..2617195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB96_RS12690 (DWB96_12725) - 2606845..2607180 (-) 336 WP_049402096.1 hypothetical protein -
  DWB96_RS12695 (DWB96_12730) - 2607193..2607399 (-) 207 WP_002467971.1 hypothetical protein -
  DWB96_RS12700 (DWB96_12735) - 2607404..2607808 (-) 405 WP_145376026.1 pathogenicity island protein -
  DWB96_RS13335 - 2607810..2607956 (-) 147 WP_167495598.1 hypothetical protein -
  DWB96_RS12705 (DWB96_12740) - 2607970..2608353 (-) 384 WP_145376029.1 hypothetical protein -
  DWB96_RS12710 (DWB96_12745) - 2608373..2608645 (-) 273 WP_096389413.1 helix-turn-helix domain-containing protein -
  DWB96_RS12715 (DWB96_12750) - 2608646..2608867 (-) 222 WP_145376031.1 helix-turn-helix transcriptional regulator -
  DWB96_RS12720 (DWB96_12755) - 2609040..2609612 (+) 573 WP_145376033.1 helix-turn-helix domain-containing protein -
  DWB96_RS12725 (DWB96_12760) - 2609689..2609922 (+) 234 WP_002468636.1 hypothetical protein -
  DWB96_RS12730 (DWB96_12765) - 2609946..2611169 (+) 1224 WP_145376035.1 tyrosine-type recombinase/integrase -
  DWB96_RS12735 (DWB96_12770) rpsR 2611396..2611638 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  DWB96_RS12740 (DWB96_12775) ssbA 2611686..2612195 (-) 510 WP_002445148.1 single-stranded DNA-binding protein Machinery gene
  DWB96_RS12745 (DWB96_12780) rpsF 2612217..2612513 (-) 297 WP_002445146.1 30S ribosomal protein S6 -
  DWB96_RS12750 (DWB96_12785) - 2612926..2613741 (+) 816 WP_002445144.1 GH25 family lysozyme -
  DWB96_RS12755 (DWB96_12790) - 2613816..2614007 (+) 192 WP_002445142.1 hypothetical protein -
  DWB96_RS12760 (DWB96_12795) ychF 2614433..2615530 (-) 1098 WP_145376037.1 redox-regulated ATPase YchF -
  DWB96_RS12765 (DWB96_12800) - 2615542..2615745 (-) 204 WP_002445134.1 DUF951 domain-containing protein -
  DWB96_RS12770 (DWB96_12805) - 2615766..2616647 (-) 882 WP_002445133.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18702.25 Da        Isoelectric Point: 4.7305

>NTDB_id=305308 DWB96_RS12740 WP_002445148.1 2611686..2612195(-) (ssbA) [Staphylococcus caprae strain 26D]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSKSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=305308 DWB96_RS12740 WP_002445148.1 2611686..2612195(-) (ssbA) [Staphylococcus caprae strain 26D]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAATTGTGTTGTCT
TCAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGCTTAGCTGGCGTTGATGGTCGCATACAATCGCGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA
CTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAATACGTCATACAATAACAATAATTCATCAAAATCTAATCAATCTGATAATCCATTTGCAAATGCGAATGGTCCAATT
GACATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.011

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

54.335

100

0.556
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.361

Multiple sequence alignment