Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DV369_RS02980 Genome accession   NZ_CP031239
Coordinates   586579..587298 (+) Length   239 a.a.
NCBI ID   WP_050948682.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M13034     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 581579..592298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV369_RS02960 - 582518..583048 (-) 531 WP_050948686.1 DsbE family thiol:disulfide interchange protein -
  DV369_RS02965 nrfE 583048..584955 (-) 1908 WP_050948685.1 heme lyase NrfEFG subunit NrfE -
  DV369_RS02970 suhB 585064..585867 (-) 804 WP_050948684.1 inositol-1-monophosphatase -
  DV369_RS02975 comN 586067..586579 (+) 513 WP_050948683.1 type II secretion system protein Machinery gene
  DV369_RS02980 comO 586579..587298 (+) 720 WP_050948682.1 type II secretion system protein J Machinery gene
  DV369_RS02985 comP 587295..587978 (+) 684 WP_050948681.1 DUF2572 family protein Machinery gene
  DV369_RS02990 comQ 587971..588258 (+) 288 WP_050948680.1 DUF5374 domain-containing protein Machinery gene
  DV369_RS02995 recC 588304..591675 (+) 3372 WP_050948679.1 exodeoxyribonuclease V subunit gamma -
  DV369_RS03000 nrdR 591737..592186 (+) 450 WP_005627362.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26805.14 Da        Isoelectric Point: 9.5423

>NTDB_id=304432 DV369_RS02980 WP_050948682.1 586579..587298(+) (comO) [Haemophilus influenzae strain M13034]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIEGKGLEIKLKGNLKQASNISYETSIVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=304432 DV369_RS02980 WP_050948682.1 586579..587298(+) (comO) [Haemophilus influenzae strain M13034]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAATCAACACATGCTATTGCATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGATGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAAGCTACAATTTAATTGGTTAATCGAAGGAAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAGCCTCAAACATCAGTTATGAAACCTCCATTGTTGTTGCGCTCTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.059

99.582

0.967

Multiple sequence alignment