Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   DIC78_RS19085 Genome accession   NZ_CP029364
Coordinates   3700445..3700828 (+) Length   127 a.a.
NCBI ID   WP_038954226.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3695445..3705828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS19050 (DIC78_19075) - 3695516..3696469 (+) 954 WP_095713277.1 magnesium transporter CorA family protein -
  DIC78_RS19055 (DIC78_19080) - 3696532..3696942 (+) 411 WP_106020097.1 CBS domain-containing protein -
  DIC78_RS19060 (DIC78_19085) comGA 3697263..3698333 (+) 1071 WP_127696768.1 competence protein ComGA Machinery gene
  DIC78_RS19065 (DIC78_19090) comGB 3698320..3699357 (+) 1038 WP_127696769.1 competence type IV pilus assembly protein ComGB Machinery gene
  DIC78_RS19070 (DIC78_19095) comGC 3699371..3699667 (+) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene
  DIC78_RS19075 (DIC78_19100) comGD 3699657..3700088 (+) 432 WP_044154579.1 competence type IV pilus minor pilin ComGD Machinery gene
  DIC78_RS19080 (DIC78_19105) comGE 3700072..3700419 (+) 348 WP_127696770.1 competence type IV pilus minor pilin ComGE Machinery gene
  DIC78_RS19085 (DIC78_19110) comGF 3700445..3700828 (+) 384 WP_038954226.1 competence type IV pilus minor pilin ComGF Machinery gene
  DIC78_RS19090 (DIC78_19115) comGG 3700829..3701203 (+) 375 WP_106020094.1 competence type IV pilus minor pilin ComGG Machinery gene
  DIC78_RS19095 (DIC78_19120) - 3701275..3701454 (+) 180 WP_003236949.1 YqzE family protein -
  DIC78_RS19100 (DIC78_19125) - 3701497..3701820 (-) 324 WP_024122040.1 YqzG/YhdC family protein -
  DIC78_RS19105 (DIC78_19130) tapA 3702097..3702858 (+) 762 WP_106020093.1 amyloid fiber anchoring/assembly protein TapA -
  DIC78_RS19110 (DIC78_19135) sipW 3702830..3703414 (+) 585 WP_105955579.1 signal peptidase I SipW -
  DIC78_RS19115 (DIC78_19140) tasA 3703479..3704264 (+) 786 WP_127696771.1 biofilm matrix protein TasA -
  DIC78_RS19120 (DIC78_19145) sinR 3704351..3704686 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  DIC78_RS19125 (DIC78_19150) sinI 3704720..3704893 (-) 174 WP_127696772.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14587.79 Da        Isoelectric Point: 7.9272

>NTDB_id=292008 DIC78_RS19085 WP_038954226.1 3700445..3700828(+) (comGF) [Bacillus halotolerans strain ZB201702]
MLISGSLAIFFHLFLSRQQENEGFMQREWVISVEQIMNECKQSQTVQTDEHGSVLICRNLSGQEVRFEIYHSMIRKRVDG
KGHVPILDHIKTMKAGVKNGMLWLKVKNENDKEYQTAFPVYTSLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=292008 DIC78_RS19085 WP_038954226.1 3700445..3700828(+) (comGF) [Bacillus halotolerans strain ZB201702]
TTGCTCATATCAGGATCGTTAGCGATATTCTTTCATCTATTTTTGTCACGTCAACAGGAGAATGAGGGCTTCATGCAGCG
GGAATGGGTCATTTCGGTAGAGCAGATCATGAATGAGTGCAAGCAGTCGCAGACAGTGCAGACAGATGAGCATGGCAGCG
TCTTAATCTGCAGAAATCTGTCAGGGCAAGAGGTCCGTTTTGAAATCTACCATTCAATGATCAGAAAAAGAGTAGACGGA
AAAGGGCATGTTCCGATTCTTGATCATATTAAAACAATGAAAGCCGGGGTTAAAAACGGGATGCTTTGGCTGAAAGTCAA
GAATGAGAATGATAAAGAGTATCAAACCGCTTTTCCGGTATATACGTCGTTAGGGGGTGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

73.228

100

0.732

Multiple sequence alignment